LOCUS       NM_001191646            1612 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus heparan sulfate-glucosamine 3-sulfotransferase
            3B1 (Hs3st3b1), mRNA.
ACCESSION   NM_001191646 XM_220557
VERSION     NM_001191646.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Shukla,D., Liu,J., Blaiklock,P., Shworak,N.W., Bai,X., Esko,J.D.,
            Cohen,G.H., Eisenberg,R.J., Rosenberg,R.D. and Spear,P.G.
  TITLE     A novel role for 3-O-sulfated heparan sulfate in herpes simplex
            virus 1 entry
  JOURNAL   Cell 99 (1), 13-22 (1999)
   PUBMED   10520990
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 17, 2010 this sequence version replaced XM_220557.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.38459.1,
                                           SRR26643284.13412.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676808 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-898               JAXUCZ010000010.1  49092288-49093185   c
            899-1612            JAXUCZ010000010.1  49060693-49061406   c
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q23"
     gene            1..1612
                     /gene="Hs3st3b1"
                     /gene_synonym="Hs3st3b"
                     /note="heparan sulfate-glucosamine 3-sulfotransferase 3B1"
                     /db_xref="GeneID:303218"
                     /db_xref="RGD:1307326"
     exon            1..898
                     /gene="Hs3st3b1"
                     /gene_synonym="Hs3st3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             345..1517
                     /gene="Hs3st3b1"
                     /gene_synonym="Hs3st3b"
                     /EC_number="2.8.2.30"
                     /note="heparan sulfate (glucosamine) 3-O-sulfotransferase
                     3B1"
                     /codon_start=1
                     /product="heparan sulfate glucosamine 3-O-sulfotransferase
                     3B1"
                     /protein_id="NP_001178575.1"
                     /db_xref="GeneID:303218"
                     /db_xref="RGD:1307326"
                     /translation="MGQRLSGGRSCLDVPGRFLPQPPPPPPPVRRKLALLFAMLCIWL
                     YMFLYSCAGSCTAAPGLLLLGSGSRATHAQPALITAPNETSPKMPFRAPPANSLVAGK
                     DKTVGAGSQEEQSPEAPDSPSPISSFFSGAGSKQLPQAIIIGVKKGGTRALLEFLRVH
                     PDVRAVGAEPHFFDRSYHKGLAWYRDLMPRTLEGQITMEKTPSYFVTREAPARISAMS
                     KDTKLIVVVRDPVTRAISDYTQTLSKRPDIPSFESLTFRNRSAGLIDTSWSAIQIGLY
                     AKHLEPWLRHFPLGQMLFVSGERLVSDPAGELRRVQDFLGLKRIITDKHFYFNQTKGF
                     PCLKKAEGSGKPHCLGKTKGRAHPTIAREVLRQLRDFYRPFNRKFYQMTGRDFGWD"
     exon            899..1612
                     /gene="Hs3st3b1"
                     /gene_synonym="Hs3st3b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctggctgcg aggaggcagc cccggcgagc tgctgtgcgc cccgtccaga gtaactgggt
       61 gcggggtaca gcgtactgac agtgcgtttg ctcacagttc ccgctgcccg gacttcgctt
      121 tccagccccg gcttctcgtg ggcatcatgt caagagccat cgccgctgca accgccgccg
      181 ccacccgagg aagagccgca gcctcggcag ccacgcgcgc acgagggcaa taaaccgaat
      241 cacttcgggc tcaaagtggc aggggaccgt cgcggtgctc tctgttccgg cgggactcgt
      301 gccatgtgct gagccatgcc cctggccgcg cccgcgggcc gcgtatgggg cagcgcctga
      361 gcggcggccg gtcctgcctc gatgtcccgg gccggttcct gccgcagccg ccgccgcccc
      421 cgccgccggt gaggaggaag ctcgcgctgc tcttcgccat gctttgcatc tggctgtaca
      481 tgttcctgta ctcgtgcgcc ggctcttgta ccgccgctcc gggcctgctg ctcttgggct
      541 ccgggtcccg cgccactcac gctcaaccag ccctgatcac agctccgaat gagacatccc
      601 ctaagatgcc cttccgggca cctccggcca actcactggt tgcaggcaag gataagacag
      661 taggcgccgg gagccaggag gagcagagtc cagaggcgcc ggactccccc agtcccatct
      721 cgagcttctt cagcggtgct gggagcaagc agctgccgca ggccatcatc atcggcgtga
      781 agaagggcgg cacgcgggcg ctgctggagt ttctgcgcgt gcaccccgac gtgcgcgccg
      841 tgggcgccga gccccacttt ttcgaccgca gctaccacaa aggtcttgcc tggtaccggg
      901 acctgatgcc cagaaccctt gagggacaga tcaccatgga gaagacgccc agctactttg
      961 tgacccggga agcacccgca cgcatctcag ccatgtccaa ggacaccaag ctcatcgtgg
     1021 tggtgcgcga cccggtgacc agggccatct cggactacac gcagacgctg tccaagcggc
     1081 cggacatccc cagcttcgag agcctgacgt tccgcaaccg cagcgcgggc ctcatagaca
     1141 cgtcctggag cgccatccag atcggtctgt acgccaagca cctggagccc tggctgcgcc
     1201 acttcccgct cggccagatg ctcttcgtga gcggggagcg cctggtcagc gacccggccg
     1261 gggagctgcg ccgcgtgcag gatttcctgg gcctcaagcg catcatcacc gacaagcact
     1321 tctacttcaa ccagaccaag ggcttcccgt gcctcaagaa ggcggagggc agcggcaagc
     1381 cgcactgcct gggcaagact aagggccgcg cgcaccccac catcgcgcgc gaggtgctgc
     1441 ggcagctgcg tgacttttac cggcccttca accgcaaatt ttaccagatg accggccgcg
     1501 acttcggctg ggactgagtc tcccctcgca gcctatctat tgagagagag tatatgtatg
     1561 taaaatgtac agaaatctat tttataataa tttattttta attcacgagc aa
//
