LOCUS       NM_001172067            1198 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus heparan sulfate-glucosamine 3-sulfotransferase
            3A1 (Hs3st3a1), mRNA.
ACCESSION   NM_001172067
VERSION     NM_001172067.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.61165.1,
                                           SRR23984936.325170.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760494
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-560               JAXUCZ010000010.1  49593208-49593767
            561-1198            JAXUCZ010000010.1  49679217-49679854
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1198
                     /gene="Hs3st3a1"
                     /gene_synonym="Hs3st3a; RGD1561262"
                     /note="heparan sulfate-glucosamine 3-sulfotransferase 3A1"
                     /db_xref="GeneID:363618"
                     /db_xref="RGD:1561262"
     CDS             1..1182
                     /gene="Hs3st3a1"
                     /gene_synonym="Hs3st3a; RGD1561262"
                     /EC_number="2.8.2.23"
                     /note="heparan sulfate (glucosamine) 3-O-sulfotransferase
                     3A; heparan sulfate (glucosamine) 3-O-sulfotransferase
                     3A1"
                     /codon_start=1
                     /product="heparan sulfate glucosamine 3-O-sulfotransferase
                     3A1"
                     /protein_id="NP_001165538.1"
                     /db_xref="GeneID:363618"
                     /db_xref="RGD:1561262"
                     /translation="MAPSGPSGAQLSPAEPLSRSIFRKFLLMLCSLLTSLYVFYCLAE
                     RCPPGSGPVAGVPGRGVPAGPKELAMWPAGAPRKRLLQLRQRRRRGRPGPGDSSDPDE
                     QSPGLAAAPGGSGAGSSVAEAQPGTLALLLDEGSKQLPQAIIIGVKKGGTRALLEFLR
                     VHPDVRAMGAEPHFFDRSYHKGLAWYRDLMPRTLEGQITMEKTPSYFVTREAPARISA
                     MSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPSFESLTFRNRSAGLIDTSWSAIQIG
                     LYAKHLEPWLRHFPLGQMLFVSGERLVSDPAGELRRVQDFLGLKRIITDKHFYFNQTK
                     GFPCLKKAEGSGKPHCLGKTKGRAHPTIAREVLRQLRDFYRPFNRKFYQMTGRDFGWD
                     G"
     exon            1..560
                     /gene="Hs3st3a1"
                     /gene_synonym="Hs3st3a; RGD1561262"
                     /inference="alignment:Splign:2.1.0"
     exon            561..1198
                     /gene="Hs3st3a1"
                     /gene_synonym="Hs3st3a; RGD1561262"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggccccct cgggtccctc tggcgcgcag ctcagcccgg cggagccact gtcgcgcagt
       61 atcttcagga agttcttgct gatgctctgc tcgctactca cttccctcta cgtcttctac
      121 tgcctggccg agcgctgccc gccgggctcc ggccccgtcg cgggggtccc agggcgcggc
      181 gttcctgctg gacccaagga actggcgatg tggcccgcgg gggcgccaag gaagcgcctc
      241 ctgcagctgc ggcagcggag gaggcgcggg cggccagggc caggagacag cagcgacccg
      301 gacgagcaga gccctgggct ggccgccgct ccaggcggct ccggggcggg gagcagcgtg
      361 gcagaggccc aacctgggac cctggcctta ctcctggacg agggcagcaa gcaactgccg
      421 caggccatca tcatcggcgt gaagaagggc ggcacgcggg cgctgctgga gtttctgcgc
      481 gtgcaccccg acgtgcgcgc catgggcgcc gagccccact ttttcgaccg cagctaccac
      541 aagggcctcg cctggtaccg ggacctgatg cccagaaccc ttgagggaca gatcaccatg
      601 gagaagacgc ccagctactt tgtgacccgg gaagcacccg cacgcatctc agccatgtcc
      661 aaggatacca agctcatcgt ggtggtgcgc gacccggtga ccagggccat ctcggactac
      721 acgcagacgc tgtccaagcg gccggacatc cccagcttcg agagcctgac gttccgcaac
      781 cgcagcgcgg gcctcataga cacgtcctgg agcgccatcc agatcggtct gtacgccaag
      841 cacctggagc cctggctgcg ccacttcccg ctcggccaga tgctcttcgt gagcggggag
      901 cgcctggtca gcgacccggc cggggagctg cgccgcgtgc aggatttcct gggcctcaag
      961 cgcatcatca ccgacaagca cttctacttc aaccagacca agggcttccc gtgcctcaag
     1021 aaggcggagg gcagcggcaa gccgcactgc ctgggcaaga ctaagggccg cgcgcacccc
     1081 accatcgcgc gcgaggtgct gcggcagctg cgtgactttt accggccctt caaccgcaaa
     1141 ttttaccaga tgaccggccg cgacttcggc tgggatggat agcagaaata atttaaaa
//
