LOCUS       NM_001398778            3034 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus HCLS1 binding protein 3 (Hs1bp3), transcript
            variant 1, mRNA.
ACCESSION   NM_001398778 XM_233975
VERSION     NM_001398778.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Shi,T., Xie,J., Xiong,Y., Deng,W., Guo,J., Wang,F. and Ma,D.
  TITLE     Human HS1BP3 induces cell apoptosis and activates AP-1
  JOURNAL   BMB Rep 44 (6), 381-386 (2011)
   PUBMED   21699750
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 23, 2021 this sequence version replaced XM_233975.10.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ224595.1, SRR26643288.26020.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JAXUCZ010000006.1  36911864-36911929
            67-232              JAXUCZ010000006.1  36915713-36915878
            233-440             JAXUCZ010000006.1  36919497-36919704
            441-660             JAXUCZ010000006.1  36921847-36922066
            661-815             JAXUCZ010000006.1  36933852-36934006
            816-951             JAXUCZ010000006.1  36935146-36935281
            952-3034            JAXUCZ010000006.1  36940044-36942126
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..3034
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /note="HCLS1 binding protein 3"
                     /db_xref="GeneID:313950"
                     /db_xref="RGD:1311331"
     exon            1..66
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..1207
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="HCLS1-binding protein 3 isoform 1"
                     /protein_id="NP_001385707.1"
                     /db_xref="GeneID:313950"
                     /db_xref="RGD:1311331"
                     /translation="MQSPAVLVTSRQVQNAHTGLDLTVPQHQEVRGKMMSGHVEYQIL
                     VVTRLAVFKSAKHRPEDVVQFLVSKKYSEIEEFYQKLYSRYPEASLPPLPRKVLFVGE
                     SDIRERRAMFDEILRCVSKDAQLAGSPELLEFLGTRSPGATGFATRDPSVLDETASRP
                     GDSDEAFDFFEQQDEVQPPTLGLSNKNVEKSLEEEEEEEEILDPLGIMRSKKPKKHQE
                     VAMRTKPSPRLTIFDEEVDPDEGLFSSDKKVSPRRPLGTTEDPLKLFDDPDLGGAVSL
                     GDPLLLPAAHESRGPTSSPEHRDASKELFRVEEDLDQILNLGSEPKPKPQLKPKPLVP
                     SKPALPRKPTVPPAVGPSGTGAGPQKQQQIQAMDEMDILQYIRDQDTLAQDSPSLF"
     exon            67..232
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
     exon            233..440
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
     exon            441..660
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
     exon            661..815
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
     exon            816..951
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
     exon            952..3034
                     /gene="Hs1bp3"
                     /gene_synonym="RGD1311331"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatcccgtg accgtccgcc agaccgcagc cgatatgcag tccccggcgg tgctcgtcac
       61 ctccaggcaa gttcagaatg cgcacacggg cctcgacctg actgtaccac agcaccagga
      121 ggtgcggggt aagatgatgt caggccatgt ggagtaccag atcctggtgg tgacccggtt
      181 ggctgtgttc aagtcagcca agcaccggcc cgaggatgtc gtccagttct tggtctccaa
      241 aaaatacagc gagatcgagg agttttacca gaaactgtac agtcgttacc cagaagccag
      301 cctgccccca ctgcctagga aggtcctgtt tgtcggggag tctgacatcc gggaaaggag
      361 agccatgttt gatgagattc tacgctgtgt ctccaaggat gcccagttgg cgggcagccc
      421 agagctgcta gaattcttag gcaccaggtc cccgggggct acaggctttg ccacccgaga
      481 tccctctgtc ttggatgaga cagccagccg gccaggggac agtgatgagg cttttgactt
      541 ctttgagcaa caggatgaag tgcagccacc cacattgggc ctgagcaaca agaatgttga
      601 gaagtccttg gaagaagagg aggaggagga ggagatactg gatcccctgg gcatcatgcg
      661 ctccaagaag cctaagaaac accaagaagt ggccatgagg accaagcctt cacctcggct
      721 caccatcttt gacgaggagg tagaccctga cgaggggctc tttagctcag acaagaaggt
      781 gtcccctcgg agacctctgg ggaccacaga ggaccccctg aagctgtttg acgaccctga
      841 cctaggtggg gctgtctccc tgggtgaccc tttactgctg ccggctgccc atgagagtag
      901 agggcccaca tccagcccag aacacaggga tgcctccaaa gagctgttca gagttgaaga
      961 ggacctggac cagattctga acctgggatc tgaaccaaaa cccaagcccc agctgaagcc
     1021 caagcctcta gtcccgtcta agccagcatt acccaggaag ccaactgtgc cccccgcagt
     1081 gggcccatca ggaactgggg ctgggccaca gaagcagcaa cagatccagg ctatggatga
     1141 aatggacatc ttgcagtata tccgggacca ggacacactt gcccaagact cccccagcct
     1201 cttctgactt ctccacaacc ctgcccttca aactatgctg ggcctgggga ggaagcctgt
     1261 gtgtcaatat gtgggttctg cttgcaaggc aaggaccacc aatggaagtg gaaccctgga
     1321 ccctcccagt ccccccacat ctttcccttt tctcctgggc tatgggatag acaaggactc
     1381 tgcagaatgt agagctgaga acaccataga aatcaagccg catcatctcc acccagctgg
     1441 ctgtaagaag aaggttattt gtgggctcgt cttgctcaac ggggacctga cctcaagtgg
     1501 ggaatgagat cggaggacag tgtcccccag ggaaaggaca tcttctgcat acttgttccc
     1561 actggccagc tcagcatggg aaggagtgtg agctttggct aggccaaagg ggtccctggg
     1621 acaggctgct ccagactctc tatttggcat agctgctagg gccccgaggt gtgttctgag
     1681 gagaaaggcc agctcccctg actgccctga cccaagtccc ttcttagtct cttctggctt
     1741 ccagtgctaa gaagaaacca taggcccagc cttgcctttc tagggcacag aggctcccag
     1801 gaccccatgc cttccacttc cttccccaga aaagggcctg gctagcccat ggccttttgg
     1861 atgcagctgt caacagagta ggtcctagca tctcccaggg tttggcccat ggggtatgag
     1921 gctctgaggc cttgtctgcc ctcaggatct gaacttgttc cttagccttt ctcctgtgga
     1981 gccaccagcc aagggagaag gaactgtgcc ccagggcaat cccgtgcctt ctagtagatg
     2041 ctgttttatg gaacgaagga ccttagagta ttttgtgtca gaaacatttt atttgtaatg
     2101 aaacacatag ggtttttgtt ttgttttgtt tttgtctttt gcttttttgt tttttcagaa
     2161 tgcagccatt ttgttccttg ggtcaactgg gcttcactga ggcattagaa gggcccagtt
     2221 gggtccaaga gccactttca ggaatctcca agtagcacgg ttcaattttt tgttgccgtc
     2281 agtgtcgggg tccccagctc ctaccctgta gtaagaccta taggatcagt ctaagagtat
     2341 caagtcggac ctatctttca tctcaccatg tcccttgtca cctgcctcga tctgagcagg
     2401 ccacctgccc aggctgaaaa cggttctagg cggaggacca gagtaccctg ctttactagg
     2461 ttgagggtct ccccagagcc ttgaactgac tctagatagc ctcgacccca actctacttc
     2521 cccttcacca gcaggccttc acccctccat ctcttggtgc ccaacactca gcccagtgtc
     2581 cagaagccct tcctcactga ctgcaaaggc aggttcacgt ggcctagtct tgtgtagagc
     2641 taccctactg tgttccctgg gcatctttgg acccttctcc ctctatatcc actcctctgt
     2701 gccttggcta ccagctctct acctctcttt catacacacc ttgcacctgc tttgggtgtt
     2761 agatgacata ggagccatgg gtgtgtaggg gcttggatga ccacagactg atccccacct
     2821 ggtgttccta accgtacctg acctgaccta ccactctcta aggtggtttt gcccactagt
     2881 ggggatgtct actgtggaga ttttgggata ccttggcgtg ggtgtttgcc ccacagatag
     2941 cattttccca atcatgattt gttttgatca caggtctgtg acctacagcc aatctatgtc
     3001 tcccagctac ccagtaaagt ctgtgtgtga caaa
//
