LOCUS       XM_039094370             988 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus histone PARylation factor 1 (Hpf1),
            transcript variant X1, mRNA.
ACCESSION   XM_039094370
VERSION     XM_039094370.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..988
                     /gene="Hpf1"
                     /gene_synonym="RGD1311747"
                     /note="histone PARylation factor 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 8 long SRA reads, 1 Protein, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     223 samples with support for all annotated introns"
                     /db_xref="GeneID:290706"
                     /db_xref="RGD:1311747"
     CDS             373..921
                     /gene="Hpf1"
                     /gene_synonym="RGD1311747"
                     /codon_start=1
                     /product="UPF0609 protein C4orf27 homolog isoform X1"
                     /protein_id="XP_038950298.1"
                     /db_xref="GeneID:290706"
                     /db_xref="RGD:1311747"
                     /translation="MKKLKEVTDRKKISILKNIDEKLTEAARKLGYSLEQRTVKMRQR
                     DKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKKICKAIVDAASDEERLKAFAPI
                     QEMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRDLFAKII
                     EDHLASRSEEDIDQLAGEPAVL"
ORIGIN      
        1 tagtgggcgc tcggaagcgg cgggaacgcg ggcctcggtg cgctgcggct gcgggatggt
       61 cggcggtggc gggaagcgcc gacccgccgg ggcgggaccg cagtgtgaaa agacagctga
      121 ggtaaagaag agtaagtctt ctgaagccga catctccagt gacctccgca aagaagtaga
      181 acatctttat aagctctccc tgcctgaaga cttctatcat ttctggaagt tctgtgaaga
      241 gcttgatccc gaaaagccag ctgagattct cctgatgaac ttcctgtata tgtgggtaca
      301 aatgaagcaa agaaaaactg tataattatt caaaatggag acaatgtgtt tgctgccatc
      361 aaattatttt tgatgaaaaa actcaaagaa gtaacagata gaaagaaaat tagcattttg
      421 aaaaacatag atgagaaact cacagaagca gccagaaaac taggatactc actggagcag
      481 agaaccgtga agatgagaca gagagataag aaggttgtga caaagacttt tcatggtgcg
      541 ggcttggttg ttcctgtaga taaaaacgac gttggctaca gagagctccc tgaaacagat
      601 gctgacctga agaaaatctg caaggcaatt gttgacgctg caagtgatga ggagagactg
      661 aaagcatttg ctcccattca ggagatgatg actttcgtgc agtttgctaa cgatgagtgt
      721 gattacggca tgggcctgga attaggaatg gacctcttct gctatggctc tcattatttt
      781 cacaaagttg ctggccagct tttacctctt gcgtataatc tactgaagag ggatctgttt
      841 gcgaaaatca ttgaagatca tctggcaagc agaagtgagg aggacataga ccagctcgca
      901 ggtgagcctg cagtgctttg aagtgggcca gcagtggctt tgtttttaag gaatggagaa
      961 ataaatggaa actttatgaa aaactgta
//
