LOCUS       NM_017356               1687 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus hippocalcin-like 1 (Hpcal1), transcript variant
            1, mRNA.
ACCESSION   NM_017356
VERSION     NM_017356.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Spilker,C. and Braunewell,K.H.
  TITLE     Calcium-myristoyl switch, subcellular localization, and
            calcium-dependent translocation of the neuronal calcium sensor
            protein VILIP-3, and comparison with VILIP-1 in hippocampal neurons
  JOURNAL   Mol Cell Neurosci 24 (3), 766-778 (2003)
   PUBMED   14664824
  REMARK    GeneRIF: direct comparison of the localization and
            calcium-dependent translocation of visinin-like-proteins 1 and 3 in
            hippocampal neurons
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Spilker,C., Gundelfinger,E.D. and Braunewell,K.H.
  TITLE     Evidence for different functional properties of the neuronal
            calcium sensor proteins VILIP-1 and VILIP-3: from subcellular
            localization to cellular function
  JOURNAL   Biochim Biophys Acta 1600 (1-2), 118-127 (2002)
   PUBMED   12445467
  REMARK    GeneRIF: Evidence for different functional properties of NVP-1 and
            NVP-3: from subcellular localization to cellular function.
REFERENCE   3  (bases 1 to 1687)
  AUTHORS   Ivings,L., Pennington,S.R., Jenkins,R., Weiss,J.L. and
            Burgoyne,R.D.
  TITLE     Identification of Ca2+-dependent binding partners for the neuronal
            calcium sensor protein neurocalcin delta: interaction with actin,
            clathrin and tubulin
  JOURNAL   Biochem J 363 (Pt 3), 599-608 (2002)
   PUBMED   11964161
REFERENCE   4  (bases 1 to 1687)
  AUTHORS   Kajimoto,Y., Shirai,Y., Mukai,H., Kuno,T. and Tanaka,C.
  TITLE     Molecular cloning of two additional members of the neural
            visinin-like Ca(2+)-binding protein gene family
  JOURNAL   J Neurochem 61 (3), 1091-1096 (1993)
   PUBMED   8360675
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Mar 29, 2021 this sequence version replaced NM_017356.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088759.1, FQ220970.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               JAXUCZ010000006.1  46206894-46207126
            234-318             JAXUCZ010000006.1  46288538-46288622
            319-720             JAXUCZ010000006.1  46306274-46306675
            721-826             JAXUCZ010000006.1  46308206-46308311
            827-1687            JAXUCZ010000006.1  46312504-46313364
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1687
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /note="hippocalcin-like 1"
                     /db_xref="GeneID:50871"
                     /db_xref="RGD:708375"
     exon            1..233
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /inference="alignment:Splign:2.1.0"
     exon            234..318
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /inference="alignment:Splign:2.1.0"
     exon            319..720
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /inference="alignment:Splign:2.1.0"
     CDS             343..924
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /note="NVL-3; visinin-like protein 3; neural visinin-like
                     protein 3; neural visinin-like Ca2+-binding protein type
                     3"
                     /codon_start=1
                     /product="hippocalcin-like protein 1"
                     /protein_id="NP_059052.1"
                     /db_xref="GeneID:50871"
                     /db_xref="RGD:708375"
                     /translation="MGKQNSKLRPEVLQDLREHTEFTDHELQEWYKGFLKDCPTGHLT
                     VDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGKLEQKLK
                     WAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNN
                     DGKLSLEEFIKGAKSDPSIVRLLQCDPSSASQF"
     exon            721..826
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /inference="alignment:Splign:2.1.0"
     exon            827..1687
                     /gene="Hpcal1"
                     /gene_synonym="NVP-3; Nvp3; VILIP-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccttcccggg ctggcggcgg ctgcgggtgg tggacctgca gagcggcggt cgcctacacc
       61 tcgctctctc ctgggccggc ggatcctttt gtctctccaa gcggtgaagg tcgcagagtc
      121 ggcgcggcgg ttgcgggcgc actgacgccc gttctattgg ttatctcccc agcctcagcc
      181 accgccgaac ttgagctcga gaagccagcg gatcgcgtcc agttccggag ccggggcatg
      241 gtctagcagc tcagtcaagc ctgtgcatca tctgatcccc agcagttctg gtcccccttg
      301 gcctctactt ggctctaggt ttagtctcca ctgccagctg ccatgggcaa gcagaacagc
      361 aaactgcggc ctgaggtgct gcaggacctg cgggaacaca cagagttcac tgaccatgag
      421 ctgcaggagt ggtataaggg cttcctcaag gactgtccca ccggccactt gacagtggac
      481 gaattcaaga agatctacgc caacttcttc ccctatggcg acgcctctaa gtttgccgaa
      541 cacgtcttcc gcacctttga caccaacagc gatggcacca tcgacttccg ggagttcatc
      601 atcgcactga gcgtgacctc tcggggcaag ctggagcaga agctcaagtg ggccttcagc
      661 atgtacgacc tggacggcaa cggctacatc agccgcagtg aaatgctgga gattgtgcag
      721 gccatctaca agatggtgtc ctccgtgatg aagatgcccg aggatgagtc cacacccgag
      781 aagcgaacag acaagatctt caggcagatg gacacaaaca atgatggcaa actgtccctg
      841 gaagaattca tcaaaggtgc caagagcgac ccgtccattg tccggttgct gcagtgtgac
      901 cccagcagtg ctagccagtt ctgaggggaa cgggcttttg gacagttgtg agaaacacag
      961 gcttgacctg ccatcttcag ctttgcttgc aaaagtggat tcctccgtga tctctcctgc
     1021 tctcccggga cctgggccag gcagcacatc acacccaccc gacctgccca gccgcaactc
     1081 cctcctctat ctgatccgtc cgttcgatat ccctccccct ccagtccagg ttggttcctt
     1141 ccaagggttc aagtgttctc ggctgtaggg ctcctccctg cccacagagg gcccggaggc
     1201 ccttaaggac accagacacg acttttcagt atcctaccga gaccagctga ttcattctat
     1261 gatcccaggt gactttgtgg ggatgaagaa gatggagagt agacaggcaa gcccttcctg
     1321 tgcatggctc cacctccctt gttcattttc tctgaccaaa gccgcttgca cgtacatacc
     1381 gtggtctcct tacttttaat gtatgagtta tgtgtacggt gagatggact ctaacgttta
     1441 gcccctgtat ttaatgcctc tgactgcctt tgaagcatgg tcccctgtgg cctgtgaccc
     1501 caccccaccc ccaagtctgg ctgtgctgtg gtatttatgc attcgtgatt tgcctgattc
     1561 cacaggagat acatgcatgc ccagggctgc ggacatctgc cctccgtgct gcaaatacag
     1621 gtgtttccgt gtgctccgtc ctcttctgta aattggtctg gcatattaaa atgatcaaat
     1681 aaaacaa
//
