LOCUS       NM_199108               3304 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus heterochromatin protein 1, binding protein 3
            (Hp1bp3), mRNA.
ACCESSION   NM_199108 XM_233579
VERSION     NM_199108.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Dutta,B., Yan,R., Lim,S.K., Tam,J.P. and Sze,S.K.
  TITLE     Quantitative profiling of chromatome dynamics reveals a novel role
            for HP1BP3 in hypoxia-induced oncogenesis
  JOURNAL   Mol Cell Proteomics 13 (12), 3236-3249 (2014)
   PUBMED   25100860
REFERENCE   2  (bases 1 to 3304)
  AUTHORS   Dutta,B., Ren,Y., Hao,P., Sim,K.H., Cheow,E., Adav,S., Tam,J.P. and
            Sze,S.K.
  TITLE     Profiling of the Chromatin-associated Proteome Identifies HP1BP3 as
            a Novel Regulator of Cell Cycle Progression
  JOURNAL   Mol Cell Proteomics 13 (9), 2183-2197 (2014)
   PUBMED   24830416
REFERENCE   3  (bases 1 to 3304)
  AUTHORS   Hayashihara,K., Uchiyama,S., Shimamoto,S., Kobayashi,S.,
            Tomschik,M., Wakamatsu,H., No,D., Sugahara,H., Hori,N., Noda,M.,
            Ohkubo,T., Zlatanova,J., Matsunaga,S. and Fukui,K.
  TITLE     The middle region of an HP1-binding protein, HP1-BP74, associates
            with linker DNA at the entry/exit site of nucleosomal DNA
  JOURNAL   J Biol Chem 285 (9), 6498-6507 (2010)
   PUBMED   20042602
REFERENCE   4  (bases 1 to 3304)
  AUTHORS   Le Douarin,B., Nielsen,A.L., Garnier,J.M., Ichinose,H.,
            Jeanmougin,F., Losson,R. and Chambon,P.
  TITLE     A possible involvement of TIF1 alpha and TIF1 beta in the
            epigenetic control of transcription by nuclear receptors
  JOURNAL   EMBO J 15 (23), 6701-6715 (1996)
   PUBMED   8978696
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC061837.1.
            
            On Jan 1, 2004 this sequence version replaced XM_233579.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061837.1, SRR8487227.249216.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3304
                     /gene="Hp1bp3"
                     /note="heterochromatin protein 1, binding protein 3"
                     /db_xref="GeneID:313647"
                     /db_xref="RGD:735099"
     exon            1..123
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            124..317
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..1883
                     /gene="Hp1bp3"
                     /codon_start=1
                     /product="heterochromatin protein 1-binding protein 3"
                     /protein_id="NP_954539.1"
                     /db_xref="GeneID:313647"
                     /db_xref="RGD:735099"
                     /translation="MATDMSQGELIHPKALPLIVGAQLIHADKLGEKADDSTMPIRRA
                     VNSTRETPPKSKLAEGEEEKPEPDGSSEESISTVEEPENETPPAPSREAEQPKGEPES
                     GEKEESKSAEETKKEEKDQSKEKEKKVKKTIPAWATLSASQLARAQKQTPMASSPRPK
                     MDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLDLERRGYLLKQALKRELNRGVIKQ
                     VKGKGASGSFVVVQKSKTPQKSKNRKKGSAVDPEPQVKLEDVLPLAFTRLCEPKEASY
                     SLIRKYVSQYYPKLRVDIRPQLLKNALQRAVERGQLEQITGKGASGTFQLKKSGEKPL
                     LGGSLMEYAILSAIAAMNEPKTCSTTALKKYVLENHPGTNSNYQMHLLKKTLQKCEKN
                     GWLEQISGKGFSGTFQLCFPYYPSPGVLFPKKVSDGSEDEDEEEDEEESSEDSEDEEP
                     PPKRSLQKKTPAKPQGKTASMKQRGAKPARKVPAAQRGKVRPLPKKAPPKAKTPARKG
                     RPAPSAVKKPSGSTSKKPVANARKEAKLPGKGKSAMKKKSFKTKK"
     exon            318..417
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            418..571
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            572..731
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            732..875
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            876..953
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1105
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1196
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..1356
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1357..1468
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1469..1585
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1586..3269
                     /gene="Hp1bp3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcagggggg cggggcggca gagctcggtg cccggcctgg aggacagcgg tgtcggagtc
       61 agcgatcggt ggtccgcagc aacgctgagg ggccgtacgg gacgcgggcg ccggagctca
      121 gaggttgact cttcaccaca ctgaagccat taggaaaccc ctgtgattaa cagcagaggc
      181 ttcagagtct caccagtatt caggcctaga ctttatttta aatggcaact gatatgtctc
      241 aaggtgaact catccatcct aaggcactcc cacttatagt aggagctcag ctgatccacg
      301 cggacaagtt aggtgagaaa gcagacgata gcaccatgcc tatccgtcgg gctgtgaatt
      361 ctactcggga aactccgccc aaaagcaaac ttgctgaagg ggaagaagaa aaaccagaac
      421 cagatgggag ttcagaggag tctatctcta cggtagaaga accagagaat gagactccac
      481 ctgctccatc cagggaggca gagcagccca agggggagcc tgagagtgga gagaaggaag
      541 agagcaagtc tgctgaggaa accaagaaag aagagaagga tcagtctaaa gaaaaggaga
      601 agaaagtgaa gaaaaccatc cctgcctggg ccactctgtc tgccagccag ctagccaggg
      661 cccagaaaca aaccccaatg gcttcctccc cacggccaaa gatggatgca atcttaactg
      721 aggccattaa ggcatgcttc cagaagagcg gtgcctccgt ggttgctatc cggaagtaca
      781 tcattcataa gtacccttct ctggatctgg agagaagggg ctatctcctc aagcaagcac
      841 tgaaaagaga gttaaacaga ggagtcatca aacaggtaaa aggaaaaggt gcatctggca
      901 gttttgtcgt ggtccagaaa tcaaaaacac ctcagaaatc caaaaacaga aagaagggct
      961 ctgcagtgga tccagaacca caagtaaaac tggaagatgt tctcccattg gcttttaccc
     1021 gactctgtga acctaaggaa gcctcctaca gtctcatcag gaaatacgtg tctcagtatt
     1081 accctaagct tcgagtggac atcaggcccc agttgttgaa gaatgctctg cagagagcag
     1141 tggagagagg ccagttagag cagataactg gcaagggtgc ttcggggaca ttccagctga
     1201 agaaatccgg ggagaaaccc ctgcttggtg gaagcctgat ggaatatgca atcttgtctg
     1261 ccattgctgc catgaatgaa cctaagacct gctccaccac tgctctgaag aagtatgtcc
     1321 tggagaacca cccagggacc aattctaact accaaatgca tttgctgaaa aaaactctgc
     1381 agaaatgtga gaagaatggg tggctggagc agatctctgg gaaggggttc agcggcacct
     1441 tccagctgtg cttcccctat taccccagcc caggagttct gtttccaaag aaagtgtcag
     1501 atggctctga ggatgaggat gaggaggagg atgaagagga gtcatcagag gactctgagg
     1561 atgaagagcc gccacccaag aggagcttac agaagaaaac accagccaag ccccaaggga
     1621 agacggcctc catgaagcag agaggggcta agcctgcgcg taaagtccct gctgcccaga
     1681 gagggaaggt gaggccgctg cctaagaaag ctccgcccaa ggctaagacc cctgccagga
     1741 aaggcagacc cgcaccctca gctgtcaaga agcctagcgg gagcacctcc aaaaagcccg
     1801 tagccaatgc acgaaaggaa gcgaaactgc ccggtaaggg taaatctgcc atgaagaaga
     1861 agtctttcaa gacaaaaaag taaattttat aggaaaaagg gtatcatgat tgaattcaga
     1921 atcttatttt ataaggtcag tgtgcatttg ttttagttat aatgctttta aattttacat
     1981 ttttcttccc atacgaacac tgtgggaagg aatgtaaaca aaccagtgta gacatttgtt
     2041 ggcttaggtg ctgttctcag tgcctgcttc ttcatcattt taatttctgc cgtaatcctg
     2101 gacttggctg aactgtgtaa ctaccctgct ccctttgttc atcttaaccc aaccctcatt
     2161 ctcttctttt tgtgatccaa tttggggttt tcttttcctc ctcgaagtta atccaaacag
     2221 ttgcaaagat gcatttgtag tgagtacctc caggtctggt gctgaagcca gacggagcgg
     2281 gagcactgca gggacagcat tgcttcctgc ctggggactt gctgattgac cctggctgtg
     2341 aaatcactcc actaaccttt ctccagcgtg ggccagggac attataactt tggaaagaag
     2401 ccccagtctg ccatccatag attctgaaga tctcttctcc tttgctgtct gcccagttgc
     2461 caagcacgcc ctgctgccca gagcgttgtt cccttaacag caagcgcacg tctgcgccgc
     2521 ctgctttctg actgaagggg aagtacagga atatgtggaa tctgattgct tattaccaaa
     2581 aatgacagaa tattcttgat caaaggccta gatatatttt taatatttgg ggcatgagct
     2641 tcccctgttt gagagttccc attactgagg tagaaatgtt aatttgctaa acataatttg
     2701 ctaaaatgac cagttttcag attcacctgt gcgtgtgccc ccactcgcac cccaccccat
     2761 tctctccata gaacgtttgc tgtcagctcg gcggtctcca tttcgaggtg tttatcagaa
     2821 gcgaggaggg gagcaaatga agccgtgctg cccagccctc ctcgtcttgt atttgtttag
     2881 gttgtgaggt tgtgtaaata gtagcttcct acttgagaac tacagctcct gcttatcatt
     2941 gatcctttcc tgtggcactt aatattttaa ttgtcttaag cttttgatgt acatcctctg
     3001 gccccttaca cgctgccaga ggagaaggtg tttgagattc attccacttg aagtgtcttt
     3061 cctgggctcc ccacagctgc agatggctgg gaagtggact tgaggaatgg gctcgaattg
     3121 gtggttcatg cctgtgagga cccatcatga gtcatcggga tttgtgttgc atggaaggca
     3181 atctttcctg ttgtaaatct tcctttttta tgtacatata ttttgaaaat atgaataaac
     3241 atgaaatttt aaaagctgct gaactacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3301 aaaa
//
