LOCUS       NM_001399755            2182 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus homeobox D8 (Hoxd8), transcript variant 1, mRNA.
ACCESSION   NM_001399755 XM_039106382
VERSION     NM_001399755.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   van den Akker,E., Fromental-Ramain,C., de Graaff,W., Le
            Mouellic,H., Brulet,P., Chambon,P. and Deschamps,J.
  TITLE     Axial skeletal patterning in mice lacking all paralogous group 8
            Hox genes
  JOURNAL   Development 128 (10), 1911-1921 (2001)
   PUBMED   11311170
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Zappavigna,V., Renucci,A., Izpisua-Belmonte,J.C., Urier,G.,
            Peschle,C. and Duboule,D.
  TITLE     HOX4 genes encode transcription factors with potential auto- and
            cross-regulatory capacities
  JOURNAL   EMBO J 10 (13), 4177-4187 (1991)
   PUBMED   1756725
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 13, 2022 this sequence version replaced XM_039106382.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.11964.1,
                                           SRR26643285.11936.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-786               JAXUCZ010000003.1  80015223-80016008
            787-2182            JAXUCZ010000003.1  80016394-80017789
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q23"
     gene            1..2182
                     /gene="Hoxd8"
                     /note="homeobox D8"
                     /db_xref="GeneID:100912936"
                     /db_xref="RGD:6489440"
     exon            1..786
                     /gene="Hoxd8"
                     /inference="alignment:Splign:2.1.0"
     CDS             204..1082
                     /gene="Hoxd8"
                     /note="isoform 1 is encoded by transcript variant 1;
                     homeobox protein Hox-D8-like"
                     /codon_start=1
                     /product="homeobox protein Hox-D8 isoform 1"
                     /protein_id="NP_001386684.1"
                     /db_xref="GeneID:100912936"
                     /db_xref="RGD:6489440"
                     /translation="MSSYFVNPLYSKYKAAAAAAAAAAAAAAAGEAINPTYYDCHFAP
                     EVSGRHAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPGCGGGGGPGPGQNYFHAGAGS
                     PVAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQ
                     YPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEF
                     LFNPYLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKENNRDKFPASRPEAKDGDPK
                     KEVSGLEEDGAEGPTN"
     exon            787..2182
                     /gene="Hoxd8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacacggagg cgcgagagcc gggcatgagc ggccggcggc cggacggtcg ggcctgaggg
       61 ggaaagcgcg cgccgggcga cgaggcccgg cggcccccgc ggctcgagcg agccgcccca
      121 gaggcccccg cggcagcgcg gccgagctga ggcgcgctcc tcaccggctc cgtgccgccc
      181 gtccgcccgc ggccgccgcc ccgatgagct cctacttcgt gaacccgctg tactccaagt
      241 acaaggcggc ggccgcggcg gcggcggcgg cggcggcggc ggccgcggcg ggcgaggcca
      301 tcaatcccac ttactacgac tgtcatttcg cgcccgaggt cagcggccgc cacgccgccg
      361 ccctgcagct ctatggcaac agcgccgccg gcttcccgca cgcgcccccg caggcgcacg
      421 cgcacccgca cccgtcgccg ccgcccgggt gcggcggagg gggcggcccg ggccccggcc
      481 agaactactt ccacgccggc gcgggcagcc cagtcgctgc ctaccaggcc gccccacctc
      541 ctcctccgca ccctccgcct ccaccgccgc ctcccccctg cggcgggatt gcctgtcacg
      601 gggagcccgc gaagttttac ggatacgata acttacagag acagccgatt tttacgaccc
      661 agcaagaggc cgagctggta caatatcctg actgtaaatc gtccagtggt aatattggcg
      721 aggacccaga ccacttaaat cagagctcgt ctccttctca aatgtttccc tggatgagac
      781 cacaagcagc tcctggtaga cggagaggaa gacaaaccta cagtcgcttc caaaccttag
      841 agttggaaaa ggaattcctt tttaaccctt atctgaccag gaagagaaga atcgaggtct
      901 cccatactct ggccctcacg gagagacagg taaaaatctg gttccagaac aggagaatga
      961 agtggaaaaa agagaacaac agagacaagt ttccagcgtc ccggccggag gcaaaggatg
     1021 gagaccccaa aaaggaagtc tcagggctgg aggaagacgg agccgaaggc cccacaaact
     1081 aaacctttac atttcatcat agactgttaa gactagtgat cagtataagt atatactggt
     1141 ggacgccacc gtttctcccc tcttcctttt tggaaaggac tttacctgtg tttcaagcta
     1201 ccttaatgtc gctgctcttg aggtttctgc gctttgaagg ggacttgggt gttttcaaag
     1261 aaagtagttt tgtagtgtcg catagaggca gtccttgagc tggtccgtag agggtaattt
     1321 gatactgacc ttgtagctat atttttataa tggtagtttt taacgtctga gctggtgatt
     1381 tgcctcaaca acataaactt cctaatgatc agcactagat gattgaatat aaaatgcttt
     1441 attaatcaaa caagtgcact tgaacatttt aaatctttat ggtgagtaaa ttaaaagaag
     1501 tttattaata atgtttttaa aattatgcct gcaaaatatt tactttatta tttgattaaa
     1561 tgtattattt atatttttct ttctgctttt gtaacaatgg tttgcgtgtc ttctggttta
     1621 cttccagaag gttcctttga gcattttgta aatgttgtca gggaagagtc tgggccaaat
     1681 attggaaaag cacattagct gaagagtgca atgtactgtc caggctgccg gcttccttaa
     1741 acctgggagt gttgtgccag tgagtttaag gatgatgtca aatttagtcc tgtgtctgta
     1801 gtttgtacaa attaaggcca tcaaataatc tagagaatta atacttgaaa tcttattgca
     1861 acattttcac taactgttcg tcctggcaag tggccttgct ttcattttga agcccgcttg
     1921 tgatcacctg ggatttctag gtctttgctc tatgctgctt tttcaagtag gtgccatatt
     1981 tattgtattc tccttgcact gctcctatgc ttgctgtgtt catctcagat gtcggttggt
     2041 acgtccatcc tctgctgttc ttcaggaaag ccatggcctc gcccatttga aatgagccct
     2101 gagtgtaaat gcagaaactc cgagtgtaaa caaccgctcc agagcatagc tccttaataa
     2161 agagatgtac ctccataaag ag
//
