LOCUS       XM_008761961            1684 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus homeobox D11 (Hoxd11), mRNA.
ACCESSION   XM_008761961
VERSION     XM_008761961.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001427402.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008761961.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1684
                     /gene="Hoxd11"
                     /note="homeobox D11; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 8 Proteins, and
                     76% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:102553842"
                     /db_xref="RGD:7730597"
     CDS             200..1210
                     /gene="Hoxd11"
                     /codon_start=1
                     /product="homeobox protein Hox-D11"
                     /protein_id="XP_008760183.3"
                     /db_xref="GeneID:102553842"
                     /db_xref="RGD:7730597"
                     /translation="MNDFDECGPSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMT
                     FPYSSNLAPHVQPVREVAFRDYGLERAKWPYRGGGGGGAGGGGGGGPGGGGGGSGGYA
                     PYYAAAAAAAAAAAAAEEAAMQRDLLPPAGRRPDVLFKAPEPVCGAPGPPHGPAAAAS
                     NFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPQPAPAPPQPEGAADKGDPKAGAGGG
                     GGSPCSKATPGPEPKGAAEGGGGEGEGPPGEAGAEKSGGTVAPQRSRKKRCPYTKYQI
                     RELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNP
                     LF"
ORIGIN      
        1 atatagatat aaggacattt ctctccatgg cgtcacgtga cataattacc accagaatca
       61 atcaagatga attgcacgtc agcgcccggt ggggattttt gcttagttga tcctggccca
      121 agcctcttgt gcaatcgatg gctcaggttg gaggcgcggg gagcggcccg aggcttgccg
      181 gcgtgcacgc cgcgcagcca tgaacgactt tgacgagtgc ggccccagcg cagccagcat
      241 gtacctgccg ggctgcgctt actacgtggc cccgtcggac ttcgccagca agccgtcgtt
      301 cctctcgcag ccgtcctcgt gccagatgac tttcccctac tcgtccaacc tggcgccgca
      361 cgtccagccc gtgcgggagg tggcgtttcg cgactacggc ctggagcgcg ccaagtggcc
      421 gtaccgcggc ggcggcggcg gcggcgcggg gggcggcggc ggcggtggcc ccggcggggg
      481 cggtggcggc tccgggggct acgctcccta ctacgccgcg gcggcggcgg cagcggcggc
      541 ggcagcggcg gccgaggagg cggccatgca gcgagatttg ctcccgcccg cgggccgccg
      601 gccagacgtg ctcttcaagg ctcctgagcc ggtgtgcggc gctcccgggc cgcctcacgg
      661 tcccgcggcc gccgcctcta acttctacag cgccgtgggt cgcaacggca tcctacccca
      721 gggctttgat cagttctacg aggcggctcc gggtccccca ttcgccggtc cgcagcccca
      781 gcccgctccc gcgccgccac agcccgaggg cgccgctgac aagggcgacc ccaaggctgg
      841 ggctggtggc ggcgggggca gtccctgctc caaggcgact ccgggcccgg agcccaaggg
      901 ggcggcggaa ggcggcggtg gcgaaggcga gggccccccg ggggaggcgg gggccgaaaa
      961 gagcggcggc acagtggccc cccagaggtc ccggaaaaag cgctgtccct acaccaagta
     1021 ccagatccgc gaactggaac gcgagttttt ctttaatgta tacataaaca aagagaaaag
     1081 actccaactc tcccggatgc tcaacctcac tgaccggcaa gtcaaaatct ggttccagaa
     1141 tcgcagaatg aaagaaaaga aactgaacag ggaccgtctg cagtatttca ctggaaaccc
     1201 cttattttga gagctccagg atgtactccc tccccagaac cccactcacc caccctcctc
     1261 cccatcagcc tgccctccgc aggcccaatg tccttgggtt caatgacgcc tcttctctgt
     1321 ggaacttcac cattccttct cgcattcaac tcgggacctc cctgcgacca ctacagcctg
     1381 aggaagaggc ctggaacttg gctgagcgga tcctaatgag gggaacatgg taaatgcaaa
     1441 catcccttta cagttttacc gccaatgtgc tgttgttcct cttctccctc tcctagtcct
     1501 cgtggacgcg gcgagatctg tagggagtta ggccatgggg ctaaaaggag tcggtgtttt
     1561 gttttaagtt taagaaatcc ctttcttccc cttcagtgaa cacagattat ttaaactctg
     1621 ggaaatgtat ctttgggcat gagtcactgt ttttttgtgt gtgaataaat ggtttctagc
     1681 aaaa
//
