LOCUS       NM_001105884            1830 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus homeo box D1 (Hoxd1), mRNA.
ACCESSION   NM_001105884 XM_001064329 XM_221520
VERSION     NM_001105884.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Guo T, Mandai K, Condie BG, Wickramasinghe SR, Capecchi MR and
            Ginty DD.
  TITLE     An evolving NGF-Hoxd1 signaling pathway mediates development of
            divergent neural circuits in vertebrates
  JOURNAL   Nat Neurosci 14 (1), 31-36 (2011)
   PUBMED   21151121
REFERENCE   2  (bases 1 to 1830)
  AUTHORS   Zakany J, Kmita M, Alarcon P, de la Pompa JL and Duboule D.
  TITLE     Localized and transient transcription of Hox genes suggests a link
            between patterning and the segmentation clock
  JOURNAL   Cell 106 (2), 207-217 (2001)
   PUBMED   11511348
  REMARK    Erratum:[Cell 2001 Sep 21;106(6):795]
REFERENCE   3  (bases 1 to 1830)
  AUTHORS   Wolf LV, Yeung JM, Doucette JR and Nazarali AJ.
  TITLE     Coordinated expression of Hoxa2, Hoxd1 and Pax6 in the developing
            diencephalon
  JOURNAL   Neuroreport 12 (2), 329-333 (2001)
   PUBMED   11209945
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_221520.4, XM_001064329.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132269 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q23"
     gene            1..1830
                     /gene="Hoxd1"
                     /note="homeo box D1"
                     /db_xref="GeneID:288151"
                     /db_xref="RGD:1309179"
     exon            1..756
                     /gene="Hoxd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             105..1091
                     /gene="Hoxd1"
                     /codon_start=1
                     /product="homeobox protein Hox-D1"
                     /protein_id="NP_001099354.1"
                     /db_xref="GeneID:288151"
                     /db_xref="RGD:1309179"
                     /translation="MSSYLEYVSCAAGGGSGGVGGDVLGFAPKFCRADARPVALQPAF
                     PLGSGDGAFVSCLPLAAARPTPSPPVAPAQPPGPQPAASRYAPCTLEGAYERGAAPAS
                     AAEYGFLGSGPAFDFPGALGRAADDSGPHVHYATSAVFSSGGSFLLSGQVDFAAFAEP
                     GPFPACLKEPADGHPGPFQTVSPAPGACPKPASPTSGLPAAHSTFEWMKVKRNAPKKS
                     KLSEYGATSPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIW
                     FQNRRMKQKKREREGLLATAASVASLQLPGSETSPIKSGRNLGSPSQAQEPS"
     exon            757..1830
                     /gene="Hoxd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atatgaggcc actatttacc tcgggctcgc tcgccatggc tcggcgaggg cagcgggggt
       61 agcggaccgg cagggtgcgg cgcctgggtc tcgcggatcg agccatgagc tcctacctgg
      121 agtacgtatc gtgcgctgcg ggcggaggca gcggaggggt aggcggcgac gtgctgggct
      181 tcgcacccaa gttctgccgc gccgacgcgc gcccagtggc cctgcagccc gccttccccc
      241 tgggcagcgg cgacggcgcc ttcgtgagct gcctgcccct ggccgctgcc cggcccacgc
      301 cttcacctcc cgtagccccc gcgcagcccc cgggcccgca gccggccgcg tcccggtacg
      361 cgccctgtac cctggaaggc gcctacgaac ggggcgccgc acctgcctct gccgccgagt
      421 atggtttctt ggggtccggg ccggcattcg actttccggg cgcgcttggg agagcagcgg
      481 acgacagcgg cccgcacgtc cactatgcca cctcggcggt cttttccagc ggaggatcat
      541 tcctgctcag cggccaggtg gacttcgctg cctttgccga gcctggcccc tttcccgctt
      601 gtctcaagga acccgcagac ggccaccccg ggccctttca gactgtgtcc ccggcccccg
      661 gagcctgccc caagcccgcc tcgcccacct ccggcctccc ggccgcccac agcactttcg
      721 agtggatgaa agtgaagagg aacgccccca agaaaagcaa actgtccgaa tatggagcca
      781 caagcccctc cagtgccatc cgcacgaatt tcagcaccaa gcaactgaca gaactcgaga
      841 aagagtttca tttcaataag tacctaacta gagcccgacg catggagata gccaactgtt
      901 tacagctgaa tgacacccag gtcaaaatct ggttccagaa ccggaggatg aaacagaaga
      961 aaagggaacg agaggggctt ctggccacag ctgcctctgt ggcctcgctt caacttcccg
     1021 ggtcagaaac aagtcccatc aaatctggcc ggaatctagg aagcccttct caggctcaag
     1081 agccttcctg aggcccactc ttaaggctga ggacctttgg attatacaga agtcacagac
     1141 tgcccccagc cacctttgta tagacttaaa agcttagtct aggctggaga cgggcgtggg
     1201 tagaagttaa tacggatttt acttggcaaa ggaattgtct atactggctt ctgaggccca
     1261 gaggctatgt atagagatat atatttgata ccttttattt gcatattatt tttgcctcat
     1321 caggggaaag ctgtctagct accagcctaa acgctgctat gttagtcatg aacaattctt
     1381 gggtacggaa tggcaggcct tcttagtctg atgtggtcaa aacgtacctc tctgaagtca
     1441 tttcagtttt aagttcctgg acagactaca tatattcagc ttcctgaaat gaccaaagct
     1501 agccagggtt ccctcaatgg agctaagctg cttcaatgat gttcatattg tactccagtt
     1561 ttatttaaag tcgttcctac ctcttcttgt gcctgagtga agatacacaa tcgctcttta
     1621 gttggtaccg gaataaatcc attgggtaga taaggattag aatctaatta taccttgaca
     1681 tcagttactc aaacttgaag tataaatata tacagtatgt atatttttta aagatttgct
     1741 tgcagtgaac cctatatatg acatttaatg tcatgcatag catgtaaaga ttttgaccgt
     1801 ttttttggta ataaaagtta cagaatctac
//
