LOCUS       XM_235695               1666 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus homeobox C13 (Hoxc13), mRNA.
ACCESSION   XM_235695
VERSION     XM_235695.9
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_235695.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1666
                     /gene="Hoxc13"
                     /note="homeobox C13; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 Proteins"
                     /db_xref="GeneID:315337"
                     /db_xref="RGD:1563984"
     CDS             1..987
                     /gene="Hoxc13"
                     /codon_start=1
                     /product="homeobox protein Hox-C13"
                     /protein_id="XP_235695.3"
                     /db_xref="GeneID:315337"
                     /db_xref="RGD:1563984"
                     /translation="MTTSLLLHPRWPESLMYVYEDSAAESGSGGGGGGGGAGGAGGGC
                     SGASPGKAPSMDGLGGSCPASHCRDLLPHPVLARPPAPLGAPQGAVYTDIPAPEAARQ
                     CAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCSYHPGDKYPEPSGALPG
                     DDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALS
                     NGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKE
                     YAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHLHST"
ORIGIN      
        1 atgacgactt cgctgctcct gcacccgcgc tggccggaga gccttatgta cgtctatgag
       61 gacagcgcgg cggagagcgg cagcggcggc ggcgggggag gcggcggcgc gggcggcgcg
      121 gggggcggct gtagcggcgc gagccccggc aaagccccga gcatggacgg tctgggcggc
      181 agctgccctg ccagccactg ccgcgacctg ctcccgcacc ccgtgttggc ccgcccgccg
      241 gctcctctgg gtgcccctca gggcgccgtc tacacggaca tcccagcccc ggaggcggcg
      301 cgccaatgcg ccccaccgcc ggcgcccccc acctcgtcca gcgccaccct gggctacggt
      361 tacccatttg ggggcagcta ctacggctgc cgcctgtcgc acaacgtgaa cctgcagcag
      421 aagccttgct cctaccatcc gggagacaag tacccagagc cgtcgggcgc cctgcctggt
      481 gacgacctgt cctctagggc taaggagttc gccttctacc ccagcttcgc cagctcctac
      541 caggcaatgc ccggctacct ggacgtgtcg gtggtgcccg ggatcagcgg gcacccggag
      601 ccgcgtcacg acgcgctcat ccctgttgaa ggctaccagc actgggctct ttccaatggc
      661 tgggacagtc aggtgtactg ctccaaggag cagtcgcagt ccgcccacct ctggaagtct
      721 cccttcccag acgtggttcc tctacagcct gaagtgagca gctaccggcg cgggcgcaag
      781 aagcgcgtgc cctacaccaa ggtgcagctg aaggagctag agaaggagta cgcagccagc
      841 aaattcatca ccaaagagaa gcgccggcgc atctcagcta ccacgaacct ctcggagcgc
      901 caggtcacca tctggttcca gaaccggcgt gtgaaagaga agaaggtggt cagcaaatcg
      961 aaagcgcctc atctccactc cacctgacct tcctttcgcc tgccctcctg ccccgactat
     1021 ttatgtcagt gctttgtacc ataacagaat tcacccgaag gacgctgcac cggcgcagac
     1081 cactatttaa tcctaccgag aaagaggaac agctctgcct taccctagtt ccatcccacc
     1141 cctaatctca ccgcccaccc cgcgccagtc ggcacccact cagcacccgc agctgtagag
     1201 gtgggttcga atggggtgcg agaggaagac tgtctctaac ccccctggcc ttggtggctt
     1261 gtcccactag aaagccaagt ggccaggata gcccagtaat tcctaccaaa gcaggactgg
     1321 gggattccaa attactcaat tcttgcctct tcctgtgtct cttatgaaag accctccttc
     1381 cggggtgcat gggcacagga tctggggagc tctttctttc tttcctgttc ccccttttta
     1441 ctctcattcc tggactccat aggcaaggtt tccccagtta cgattgattt ttctgtgcat
     1501 cttttaaaag tcgtgttaat attgatgcta atccttaggg cctggcagtg taatgtaatt
     1561 caaactaaac tgttctcgga gtttgtagat ttgatctctt tctttctttc tttctttctt
     1621 tctttctttc tttctttctt ccttccttcc ttccttcctt ccttcc
//
