LOCUS       XM_039087720            1529 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus homeo box B6 (Hoxb6), transcript
            variant X1, mRNA.
ACCESSION   XM_039087720
VERSION     XM_039087720.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087720.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1529
                     /gene="Hoxb6"
                     /gene_synonym="RGD1562142"
                     /note="homeo box B6; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 11 ESTs, 21 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 13 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:497986"
                     /db_xref="RGD:1562142"
     CDS             217..891
                     /gene="Hoxb6"
                     /gene_synonym="RGD1562142"
                     /codon_start=1
                     /product="homeobox protein Hox-B6 isoform X1"
                     /protein_id="XP_038943648.1"
                     /db_xref="GeneID:497986"
                     /db_xref="RGD:1562142"
                     /translation="MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYG
                     PGPGQDKGFAASSYYPPAGGGYGRAAPCDYGPAPAFYREKDAACALSGADEPPPFHPE
                     PRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLE
                     LEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEE
                     EEKPAE"
ORIGIN      
        1 ctgagaaggg gaaaggacgg ctctcaggtt gggacaatat tatctggaag ctgaagaaga
       61 aaaccgaatg ctcctttttc cctccctccc cacccttttg gaaccggagg ggggcaaaaa
      121 aacccaagtt ctgcaaaggc gcggcgctcg gactataaaa cacaacaaat cataaacccg
      181 gcggagcagc agcggccgcg cgcgcctccc ctcccgatga gttcctattt cgtgaactcc
      241 accttccccg tcactctggc cagcgggcag gagtccttcc tgggccagct gccgctctac
      301 tcgtctggct atgcggaccc gctgcggcac tatcccgcgc cttacgggcc gggacccggc
      361 caggacaagg gctttgcggc gtcctcctat tacccaccag ccggcggcgg ctatggtcgg
      421 gcggcgccct gtgactatgg gccggcgcct gccttctacc gggagaagga cgcggcctgc
      481 gccctctccg gcgccgacga gccgcccccg ttccaccccg agccgcgcaa gtccgactgc
      541 gcacaggaca agagcgtgtt cggagagacc gaggagcaga agtgctccac gcccgtctac
      601 ccgtggatgc agcgcatgaa ttcgtgcaac agttcctctt ttgggcccag cggtcggcga
      661 ggccgccaga cctacacccg ctaccagacc ctggagctgg agaaggaatt tcactacaat
      721 cgctacctga cccgccggcg gcgcatagag atcgcgcacg ccctgtgcct gaccgagcgg
      781 cagatcaaga tctggtttca gaaccggcgc atgaagtgga aaaaggagag caaactgctc
      841 agtgcgtctc agctcagtgc ggaggaggag gaagaaaagc cggccgagtg aaggtgctgc
      901 caagggaggg gggacgcgaa gggagaggtc tgagggggaa cctagggcac ccgaaagccc
      961 cagaaggctc tgcggtcggg ggacttgctg tccagcgcaa gacgggcggg gcccagcgct
     1021 ttcctggatg cccccctcct gcagagctct tcctgggcgc ttgaaggatg cccaccccag
     1081 caccccagcg cctcctccct ccccgaagaa cccaccttgg cctcagcagg ctctctggtg
     1141 agaactgaga atcggactca cttgatgtct cctggaagca gagcagaatg ctcttgtcct
     1201 tgtcgagtct catttccttc atgtcccccg tgcacggttc aatggtagat tcgctgtccc
     1261 ctcagcaggg acctgaaaga ctccctgacc ccagacttgt ctctcctacc ccctccccaa
     1321 agccactgga aggagcacat actacctaga agtaagaaga ggagcctcag aagaaaacaa
     1381 agttctattt tattaatttt ctatgtgttg tgtttgtagt cttgtcttag ctctggacgt
     1441 gaaatacttc ggtaataata ttaatattat taataatgat tatgatgatg atgatgataa
     1501 taaagatgtg aaaacccgca gctcaatca
//
