LOCUS       NM_001398852            1437 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus homeo box B6 (Hoxb6), mRNA.
ACCESSION   NM_001398852 XM_006247232
VERSION     NM_001398852.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1437)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1437)
  AUTHORS   McIntyre,D.C., Rakshit,S., Yallowitz,A.R., Loken,L., Jeannotte,L.,
            Capecchi,M.R. and Wellik,D.M.
  TITLE     Hox patterning of the vertebrate rib cage
  JOURNAL   Development 134 (16), 2981-2989 (2007)
   PUBMED   17626057
REFERENCE   3  (bases 1 to 1437)
  AUTHORS   Kappen,C.
  TITLE     Disruption of the homeobox gene Hoxb-6 in mice results in increased
            numbers of early erythrocyte progenitors
  JOURNAL   Am J Hematol 65 (2), 111-118 (2000)
   PUBMED   10996827
REFERENCE   4  (bases 1 to 1437)
  AUTHORS   Medina-Martinez,O., Bradley,A. and Ramirez-Solis,R.
  TITLE     A large targeted deletion of Hoxb1-Hoxb9 produces a series of
            single-segment anterior homeotic transformations
  JOURNAL   Dev Biol 222 (1), 71-83 (2000)
   PUBMED   10885747
REFERENCE   5  (bases 1 to 1437)
  AUTHORS   Rancourt,D.E., Tsuzuki,T. and Capecchi,M.R.
  TITLE     Genetic interaction between hoxb-5 and hoxb-6 is revealed by
            nonallelic noncomplementation
  JOURNAL   Genes Dev 9 (1), 108-122 (1995)
   PUBMED   7828847
REFERENCE   6  (bases 1 to 1437)
  AUTHORS   Iimura,T., Oida,S., Takeda,K., Maruoka,Y. and Sasaki,S.
  TITLE     Changes in homeobox-containing gene expression during ectopic bone
            formation induced by bone morphogenetic protein
  JOURNAL   Biochem Biophys Res Commun 201 (2), 980-987 (1994)
   PUBMED   7911662
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 27, 2021 this sequence version replaced XM_006247232.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.63488.1,
                                           SRR26643287.25460.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-539               JAXUCZ010000010.1  81761471-81762009
            540-1437            JAXUCZ010000010.1  81763100-81763997
FEATURES             Location/Qualifiers
     source          1..1437
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..1437
                     /gene="Hoxb6"
                     /gene_synonym="RGD1562142"
                     /note="homeo box B6"
                     /db_xref="GeneID:497986"
                     /db_xref="RGD:1562142"
     exon            1..539
                     /gene="Hoxb6"
                     /gene_synonym="RGD1562142"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..799
                     /gene="Hoxb6"
                     /gene_synonym="RGD1562142"
                     /codon_start=1
                     /product="homeobox protein Hox-B6"
                     /protein_id="NP_001385781.1"
                     /db_xref="GeneID:497986"
                     /db_xref="RGD:1562142"
                     /translation="MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYG
                     PGPGQDKGFAASSYYPPAGGGYGRAAPCDYGPAPAFYREKDAACALSGADEPPPFHPE
                     PRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLE
                     LEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEE
                     EEKPAE"
     exon            540..1437
                     /gene="Hoxb6"
                     /gene_synonym="RGD1562142"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccatcccccc tcagctaaaa cccaatctcg gctatactac taataggcgc ggcgctcgga
       61 ctataaaaca caacaaatca taaacccggc ggagcagcag cggccgcgcg cgcctcccct
      121 cccgatgagt tcctatttcg tgaactccac cttccccgtc actctggcca gcgggcagga
      181 gtccttcctg ggccagctgc cgctctactc gtctggctat gcggacccgc tgcggcacta
      241 tcccgcgcct tacgggccgg gacccggcca ggacaagggc tttgcggcgt cctcctatta
      301 cccaccagcc ggcggcggct atggtcgggc ggcgccctgt gactatgggc cggcgcctgc
      361 cttctaccgg gagaaggacg cggcctgcgc cctctccggc gccgacgagc cgcccccgtt
      421 ccaccccgag ccgcgcaagt ccgactgcgc acaggacaag agcgtgttcg gagagaccga
      481 ggagcagaag tgctccacgc ccgtctaccc gtggatgcag cgcatgaatt cgtgcaacag
      541 ttcctctttt gggcccagcg gtcggcgagg ccgccagacc tacacccgct accagaccct
      601 ggagctggag aaggaatttc actacaatcg ctacctgacc cgccggcggc gcatagagat
      661 cgcgcacgcc ctgtgcctga ccgagcggca gatcaagatc tggtttcaga accggcgcat
      721 gaagtggaaa aaggagagca aactgctcag tgcgtctcag ctcagtgcgg aggaggagga
      781 agaaaagccg gccgagtgaa ggtgctgcca agggaggggg gacgcgaagg gagaggtctg
      841 agggggaacc tagggcaccc gaaagcccca gaaggctctg cggtcggggg acttgctgtc
      901 cagcgcaaga cgggcggggc ccagcgcttt cctggatgcc cccctcctgc agagctcttc
      961 ctgggcgctt gaaggatgcc caccccagca ccccagcgcc tcctccctcc ccgaagaacc
     1021 caccttggcc tcagcaggct ctctggtgag aactgagaat cggactcact tgatgtctcc
     1081 tggaagcaga gcagaatgct cttgtccttg tcgagtctca tttccttcat gtcccccgtg
     1141 cacggttcaa tggtagattc gctgtcccct cagcagggac ctgaaagact ccctgacccc
     1201 agacttgtct ctcctacccc ctccccaaag ccactggaag gagcacatac tacctagaag
     1261 taagaagagg agcctcagaa gaaaacaaag ttctatttta ttaattttct atgtgttgtg
     1321 tttgtagtct tgtcttagct ctggacgtga aatacttcgg taataatatt aatattatta
     1381 ataatgatta tgatgatgat gatgataata aagatgtgaa aacccgcagc tcaatca
//
