LOCUS       XM_039086076            3662 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus homeo box B3 (Hoxb3), transcript
            variant X7, mRNA.
ACCESSION   XM_039086076
VERSION     XM_039086076.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3662
                     /gene="Hoxb3"
                     /note="homeo box B3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 ESTs, 22 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:303488"
                     /db_xref="RGD:1310780"
     CDS             860..2146
                     /gene="Hoxb3"
                     /codon_start=1
                     /product="homeobox protein Hox-B3 isoform X2"
                     /protein_id="XP_038942004.1"
                     /db_xref="GeneID:303488"
                     /db_xref="RGD:1310780"
                     /translation="MQKATYYDNTAAALFGGYSSYPGSNGFGYDGPPQPPFQAATHLE
                     GDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLPAPPGSPPPSAAPTSTTSN
                     SNNGGGPSKSGPPKCGASSNSTLTKQIFPWMKESRQTSKLKNSSPGTEGCGGGGGGGG
                     GGGSSSGGGGSGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVE
                     MANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNA
                     LHSMTPSYDSPSPPAFSKGHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYESHVLQA
                     NGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAAPMAP
                     GQHHGPCDPHPTYTDLSSHHAPPQGRIQEAPKLTHL"
ORIGIN      
        1 gaactcgaga agggtaagct gaatcaaatt cctgctctgt catttttctc ccaagtaatg
       61 acctgcgcaa aattcaatat gaccgagcga actgcgtgag catattatag taactgcctg
      121 ctcgtggggg aggcccggag aggggtgaac cgcaggtcac ggcgtctaaa aattattaaa
      181 atgttcgaga gcctcgtgac gcgcctagct gtttaacaaa gactgccaaa gtatgagatt
      241 aatacgaaaa cttgctcttc aaaaacaaaa acacaccaaa aaaaaaaaaa aaaggctttt
      301 tccggcctcc gagggggcct gtggttcctc tgcccgcagt cgcggttcgg ttttccggat
      361 acacaatagt ggacgggagc gagctccgct gttgctcagc gggccacggc cggtcggcta
      421 gaaacaggcg gggagcggct ggcaaatctc cacagaccgg ctgttggggg aaaaaagtgt
      481 tagccgcctc tcccggatct gcaaggggga aaaattttgg agccataaag ttgaaaactt
      541 ttttctctca gttttggaag aagcctttcg tcatgaatgg gaccagagga gctcgggcga
      601 gagcgggcaa gaggcacaga aggaggggag atttctcgcc tgccgctcgc gctggggctc
      661 gatgtgaata tatattatgt ctgcctgttc tcccctcgtc ggtggctaag gtcagccgct
      721 tggaacagac ccgggaggag gggggcagaa aggggagggg ggtccggcgt gtcacgtgac
      781 ccccaggggt gccaatgtcc ggtcgtgagg gtatcaggcc cttgcaagtt gccacccact
      841 gcccgggcct cgcccagcga tgcagaaagc cacctactac gacaacaccg cagctgcgct
      901 cttcggaggc tactcctcgt accctggcag caatggtttc ggctacgacg ggcctcccca
      961 gccccccttt caggccgcta cacacctgga gggtgactac cagcgctcag cgtgttccct
     1021 gcagtccctg ggcaatgccg ccccacatgc caagagcaag gagctcaacg gcagctgcat
     1081 gaggccaggc ctggccccag agcccctgcc cgcaccgccg ggttcacccc cacccagcgc
     1141 cgcacctacc agtaccacta gcaacagcaa taacgggggt gggcccagca aaagcggccc
     1201 ccccaagtgc ggtgccagct ccaactccac cctcaccaaa cagatattcc cctggatgaa
     1261 agagtcaagg caaacgtcca agctgaaaaa cagctccccg ggcacagaag gttgtggtgg
     1321 cggcggcggc ggcggtggcg gcggcggtag tagcagcggc gggggcggca gcggcggcgg
     1381 gggaggggac aagagccccc cggggtcggc ggcgtccaag cgggcgcgga cggcatacac
     1441 aagcgcgcag ctggttgagc tggagaagga gttccacttc aaccgttatt tgtgccggcc
     1501 gcgccgcgtc gagatggcca atctgctgaa cctcagcgag cggcagatca agatctggtt
     1561 ccagaaccgc cgcatgaagt acaagaaaga ccagaaggcc aaggggctgg cctcgtcctc
     1621 cgggggtccc tctccggccg gaagcccccc gcagcccatg cagtccacgg ccggcttcat
     1681 gaacgcctta cactccatga cccccagcta cgacagcccg tccccaccag ccttcagcaa
     1741 aggccaccag aatgcctacg cgctgccttc caactatcag ccccctctca agggttgcgg
     1801 cgccccacag aagtaccccc cgaccccggc gccggagtat gagtcccacg tcctccaagc
     1861 caacggggga gcctacggga cgcccaccat gcagggcagt cctgtctatg tgggcggggg
     1921 tggctacgcg gatccgttgc cgccccctgc cggcccctcc ctctacggcc tcaatcacct
     1981 ttcccaccac ccctcgggga acctggacta caacggggcg gcccctatgg cccccggcca
     2041 gcatcacgga ccctgtgacc ctcaccccac gtacacagac ctctcctctc accacgcacc
     2101 gcctcagggt agaatccaag aagcgcccaa actgacacac ctgtgatggg aggggcgggc
     2161 tggggagggg ggggtgaggt taagggacag ggagaccgtg gaactggggg atgggcgcgg
     2221 tttggagtcc tgaaaaaggt atgtgttggg gttgtcgcca ggcttccatt aacagaagag
     2281 gccttggggg tgccttccct gctctcaggc cccgaggggc tgtcttttaa gtcctccagg
     2341 cctggttcca tctgcctgcc aacacccttg gaaaggaatc cacagcaggt tggagacggg
     2401 accacatcaa ccccagagtt cccagggttc cagcactacc aagttggaat tccagattgg
     2461 aggggtgagg tggagtcggg tagagaggga gccaagatag acaagcaggg cagagaagca
     2521 cattcaaaac ttaatggctt ggctatcatc aaacaatcaa cttaccttgc atctctgtgg
     2581 gtaattcccc caaatcttga tttttttttt gattctccct ttcagtctcc ttatgaaaaa
     2641 aaaaaaataa gaaaaacact tttaaatcta agggcacaaa gtatgtttct ctcctacttc
     2701 cctgaagctt caacttgccc cccacctgtg ttaggcttct ggctatcatt tctagcccta
     2761 ggttggtttt ctgctctaag gacattcata tctacacccc acccctattg attacaggtt
     2821 tcagagggct cagggatggt aagatatcct gaaagttaga gctgcctata atataaataa
     2881 atatatattt ttttctttta aggaaaggtt aagaggccaa ggcaggcaag ttgtcaggac
     2941 tggaggctca ccagctctac aacctctcag ctcccacccc atcccactct ctccacagag
     3001 agctctccac ttttcttttt cttctgttct tctcttgact taacgtgaaa acagggtata
     3061 tttgaacaaa ctgactgtcc taggcaggtg ctgcagctgg gcctgtgtac cttgctccag
     3121 ttcctgggac attcttcttg cacttggagt ttacatttta atggatatta aaaaaaaaaa
     3181 aaacaactgt gagagatgcc tgggcctgca gacgtccagc ttcgctcaaa gagtgtgtgt
     3241 tctagtgaac attttcatat atatttattg gttatagcct gttaaaatat tttctttttt
     3301 tgtattattt atccccccct gcattatgta tttatatgag ggacagaaaa aggaaaaaat
     3361 tgtacttttt tagtatttac ttgtgtttcc tgtcatgtaa aaccagcgat tttagttttt
     3421 attgtatttc tagacgagag ctgtagattt atgttaaact cgtacttatg agcaattgta
     3481 attagttcta aaaggcatga actcggctcc taaatgtcac tgtatagtcc tgaattggta
     3541 gagataagaa gttaattctc tcttggaact ttctttgttc ttccgtagtt atttttttcc
     3601 ccttagttaa aagagttgtc tgttaaaaca atccttgaat aaactttctg ttatcaattt
     3661 ta
//
