LOCUS       XM_017597315            4597 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus homeo box B3 (Hoxb3), transcript
            variant X4, mRNA.
ACCESSION   XM_017597315
VERSION     XM_017597315.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597315.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597315.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4597
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4597
                     /gene="Hoxb3"
                     /note="homeo box B3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 6 ESTs, 31
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 16 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:303488"
                     /db_xref="RGD:1310780"
     CDS             1792..3081
                     /gene="Hoxb3"
                     /codon_start=1
                     /product="homeobox protein Hox-B3 isoform X1"
                     /protein_id="XP_017452804.1"
                     /db_xref="GeneID:303488"
                     /db_xref="RGD:1310780"
                     /translation="MQKATYYDNTAAALFGGYSSYPGSNGFGYDGPPQPPFQAATHLE
                     GDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLPAPPGSPPPSAAPTSTTSN
                     SNNGGGPSKSGPPKCGASSNSTLTKQIFPWMKESRQTSKLKNSSPGTAEGCGGGGGGG
                     GGGGSSSGGGGSGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRV
                     EMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMN
                     ALHSMTPSYDSPSPPAFSKGHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYESHVLQ
                     ANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAAPMA
                     PGQHHGPCDPHPTYTDLSSHHAPPQGRIQEAPKLTHL"
ORIGIN      
        1 caggttcctt ttggggtgga aagtcaaggc tgagctcaag gacagggtgt taggaagaga
       61 ggagaggaga caaaggccag ccctaggggc agagagattg ttctggaaga agtggtaaag
      121 gaagccgctt ggttttttgc ttcccttctc tccagaaaag actctctcag agatagggtg
      181 tggattctcc cacagaggaa agggccccaa aggagaagga aaaggtggcc taaggagcac
      241 accagcccag aagtgattcc tggaaatact cagaagtcct gcctgaggtg ccactcagat
      301 tcccttaaga agctgagaga ggcagaatgt aaggcgacaa cggggctgtg agaaaaggat
      361 agagacaaca gaggtggcag agaggggccg ggggaagagt ctacaaccct tggagggctg
      421 actccttcag actccatgag ccattctctg cccccggtaa gggaagcttt ccttacagga
      481 agttgccaaa gtggagacct tcttagaaac tactgcctgt aaagtaagcc ccttaaaggc
      541 tctaatcagg tgtgaggcat ccaggggacc atccaccatg ccaggggatg gccgagatgt
      601 cctgggcact ctagtctcct cttgtactgg tgcggtaacc cgggctcttt cccaaaacaa
      661 gcgccatcac cgcagggaga ttggcacaag attctgaaac ctagggggaa gactccccct
      721 tcctcagctc ccccttttac ctctcttctg caaccaacga cttggttttg caactacttt
      781 cacctccacg tttcttccat taactcttca atttaacaaa cggatgcttc cctttcagat
      841 cccctccctc cttcatcttt caggaaagaa aataataaaa ggggaagacc ctatcagcct
      901 aagcaacttt aaagggcctg aaggggaagt tggggaaaga ggagaaaaag aaagaaagga
      961 gtccttgggg ctccccagtt tttcctatta cctctgctac ccaagctctc cctcctccat
     1021 agtaccccac cccctcctgc cctgccctgg accgtctccc attccctccc ttctccttcg
     1081 ggccggacat atggaaccca tttcgctggt gacattgaag agccgccggt gcgcccgcct
     1141 tccgccatgg cgcccccgag gcccccgtgc ttctccgtgg tcctgtcagt cgccacttct
     1201 ttcgcccggc gactcggtca cttctcaggc cgggacccgc accaagccgg gattccctca
     1261 gcccggcgcg ggccttggtg ggaccgcggg ctccgcgcac tcggagcatc ccggggcagg
     1321 gctcctgcag tcggaacaaa gccgggggcg ggggcgaggc gcaggccggc ctctttctcc
     1381 ctcatcccca ccccagcacg gcgggggcgc tcccagggcc aagctatcag gatgtggccg
     1441 gcccaggcgc atccccagtc cggaccgagg gtcccgagac tggccatcag ctcttacgcg
     1501 ttccccgcac ccggccgccc gccgcggctc gcaccctagt ccgagaccgc acaggagggg
     1561 agatttctcg cctgccgctc gcgctggggc tcgatgtgaa tatatattat gtctgcctgt
     1621 tctcccctcg tcggtggcta aggtcagccg cttggaacag acccgggagg aggggggcag
     1681 aaaggggagg ggggtccggc gtgtcacgtg acccccaggg gtgccaatgt ccggtcgtga
     1741 gggtatcagg cccttgcaag ttgccaccca ctgcccgggc ctcgcccagc gatgcagaaa
     1801 gccacctact acgacaacac cgcagctgcg ctcttcggag gctactcctc gtaccctggc
     1861 agcaatggtt tcggctacga cgggcctccc cagcccccct ttcaggccgc tacacacctg
     1921 gagggtgact accagcgctc agcgtgttcc ctgcagtccc tgggcaatgc cgccccacat
     1981 gccaagagca aggagctcaa cggcagctgc atgaggccag gcctggcccc agagcccctg
     2041 cccgcaccgc cgggttcacc cccacccagc gccgcaccta ccagtaccac tagcaacagc
     2101 aataacgggg gtgggcccag caaaagcggc ccccccaagt gcggtgccag ctccaactcc
     2161 accctcacca aacagatatt cccctggatg aaagagtcaa ggcaaacgtc caagctgaaa
     2221 aacagctccc cgggcacagc agaaggttgt ggtggcggcg gcggcggcgg tggcggcggc
     2281 ggtagtagca gcggcggggg cggcagcggc ggcgggggag gggacaagag ccccccgggg
     2341 tcggcggcgt ccaagcgggc gcggacggca tacacaagcg cgcagctggt tgagctggag
     2401 aaggagttcc acttcaaccg ttatttgtgc cggccgcgcc gcgtcgagat ggccaatctg
     2461 ctgaacctca gcgagcggca gatcaagatc tggttccaga accgccgcat gaagtacaag
     2521 aaagaccaga aggccaaggg gctggcctcg tcctccgggg gtccctctcc ggccggaagc
     2581 cccccgcagc ccatgcagtc cacggccggc ttcatgaacg ccttacactc catgaccccc
     2641 agctacgaca gcccgtcccc accagccttc agcaaaggcc accagaatgc ctacgcgctg
     2701 ccttccaact atcagccccc tctcaagggt tgcggcgccc cacagaagta ccccccgacc
     2761 ccggcgccgg agtatgagtc ccacgtcctc caagccaacg ggggagccta cgggacgccc
     2821 accatgcagg gcagtcctgt ctatgtgggc gggggtggct acgcggatcc gttgccgccc
     2881 cctgccggcc cctccctcta cggcctcaat cacctttccc accacccctc ggggaacctg
     2941 gactacaacg gggcggcccc tatggccccc ggccagcatc acggaccctg tgaccctcac
     3001 cccacgtaca cagacctctc ctctcaccac gcaccgcctc agggtagaat ccaagaagcg
     3061 cccaaactga cacacctgtg atgggagggg cgggctgggg aggggggggt gaggttaagg
     3121 gacagggaga ccgtggaact gggggatggg cgcggtttgg agtcctgaaa aaggtatgtg
     3181 ttggggttgt cgccaggctt ccattaacag aagaggcctt gggggtgcct tccctgctct
     3241 caggccccga ggggctgtct tttaagtcct ccaggcctgg ttccatctgc ctgccaacac
     3301 ccttggaaag gaatccacag caggttggag acgggaccac atcaacccca gagttcccag
     3361 ggttccagca ctaccaagtt ggaattccag attggagggg tgaggtggag tcgggtagag
     3421 agggagccaa gatagacaag cagggcagag aagcacattc aaaacttaat ggcttggcta
     3481 tcatcaaaca atcaacttac cttgcatctc tgtgggtaat tcccccaaat cttgattttt
     3541 tttttgattc tccctttcag tctccttatg aaaaaaaaaa aataagaaaa acacttttaa
     3601 atctaagggc acaaagtatg tttctctcct acttccctga agcttcaact tgccccccac
     3661 ctgtgttagg cttctggcta tcatttctag ccctaggttg gttttctgct ctaaggacat
     3721 tcatatctac accccacccc tattgattac aggtttcaga gggctcaggg atggtaagat
     3781 atcctgaaag ttagagctgc ctataatata aataaatata tatttttttc ttttaaggaa
     3841 aggttaagag gccaaggcag gcaagttgtc aggactggag gctcaccagc tctacaacct
     3901 ctcagctccc accccatccc actctctcca cagagagctc tccacttttc tttttcttct
     3961 gttcttctct tgacttaacg tgaaaacagg gtatatttga acaaactgac tgtcctaggc
     4021 aggtgctgca gctgggcctg tgtaccttgc tccagttcct gggacattct tcttgcactt
     4081 ggagtttaca ttttaatgga tattaaaaaa aaaaaaaaca actgtgagag atgcctgggc
     4141 ctgcagacgt ccagcttcgc tcaaagagtg tgtgttctag tgaacatttt catatatatt
     4201 tattggttat agcctgttaa aatattttct ttttttgtat tatttatccc cccctgcatt
     4261 atgtatttat atgagggaca gaaaaaggaa aaaattgtac ttttttagta tttacttgtg
     4321 tttcctgtca tgtaaaacca gcgattttag tttttattgt atttctagac gagagctgta
     4381 gatttatgtt aaactcgtac ttatgagcaa ttgtaattag ttctaaaagg catgaactcg
     4441 gctcctaaat gtcactgtat agtcctgaat tggtagagat aagaagttaa ttctctcttg
     4501 gaactttctt tgttcttccg tagttatttt tttcccctta gttaaaagag ttgtctgtta
     4561 aaacaatcct tgaataaact ttctgttatc aatttta
//
