LOCUS       XM_220896                986 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus homeo box B1 (Hoxb1), mRNA.
ACCESSION   XM_220896
VERSION     XM_220896.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001100552.1.
            
            On Jan 21, 2021 this sequence version replaced XM_220896.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..986
                     /gene="Hoxb1"
                     /note="homeo box B1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 14%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:303491"
                     /db_xref="RGD:1310298"
     CDS             1..894
                     /gene="Hoxb1"
                     /codon_start=1
                     /product="homeobox protein Hox-B1"
                     /protein_id="XP_220896.4"
                     /db_xref="GeneID:303491"
                     /db_xref="RGD:1310298"
                     /translation="MDYNRMNSFLEYPLCNRGPSAYSAPTSFPPSSAPAVDSYAGESR
                     YGGGLPSSALQQNSGYPVQQPPSSLGVSFPSSAPSGYAPAACNPSYGPSQYYSMGQSE
                     GDGGYFHPSSYGAQLGGLPDSYGAGGVGSGPYPPPQPPYGTEQTSNFASAYDLLSEDK
                     ESSCSSEPSSLTARTFDWMKVKRNPPKTAKVSELGLGTPGGLRTNFTTRQLTELEKEF
                     HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGRVPAGPPGCPKEAA
                     GEASDQSACTSPEASPSSITS"
ORIGIN      
        1 atggactata atagaatgaa ttccttttta gagtacccac tttgcaatcg gggacccagc
       61 gcctacagcg ccccaacctc ttttcccccc agctcagctc cggcggttga cagctacgca
      121 ggggagagcc gctatggtgg agggctgccc agctcagcgc tccaacaaaa ctcggggtat
      181 cctgtccagc agccgccttc atccctgggg gtgtcctttc ccagctccgc tccctcgggg
      241 tacgccccag ccgcctgcaa ccccagctat gggccttctc agtattattc tatgggtcag
      301 tcggaaggag atggaggcta ttttcatccg tcgagctacg gagcccagct agggggtttg
      361 cccgacagct atggagcggg tggagtcggc tcagggccat atcctccacc gcaaccccct
      421 tacggaactg agcagacctc aaactttgca tcagcctacg atctcctctc tgaggacaag
      481 gaatcatctt gctcgtcaga acccagctct ctcactgccc ggaccttcga ctggatgaag
      541 gtcaagagaa acccacctaa gacagcaaag gtgtccgagc tgggactggg cactcccggc
      601 ggtctccgta caaacttcac cacacgccag ctgacggagc tggagaaaga attccatttc
      661 aacaaatacc tgagccgcgc ccggagggtg gagatcgccg ctaccctgga gctcaatgaa
      721 acgcaggtga agatctggtt ccagaaccgg cgcatgaagc aaaagaaacg cgagcgagag
      781 gggggcaggg tgcctgcagg ccctccaggt tgccccaagg aagcggctgg agaggcctcc
      841 gaccagtctg cgtgcacctc cccagaagct tcgcccagtt ccatcacctc ttaaattgaa
      901 cttcctaagt aacccggctt cacacactgg acccagtcct ctcctagact ctcccaacct
      961 tcacagccct ggtgaccctc ctcaag
//
