LOCUS       XM_008770342            2554 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus HORMA domain containing 2 (Hormad2),
            transcript variant X2, mRNA.
ACCESSION   XM_008770342
VERSION     XM_008770342.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008770342.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008770342.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2554
                     /gene="Hormad2"
                     /note="HORMA domain containing 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:498400"
                     /db_xref="RGD:1565447"
     CDS             854..1825
                     /gene="Hormad2"
                     /codon_start=1
                     /product="HORMA domain-containing protein 2 isoform X1"
                     /protein_id="XP_008768564.2"
                     /db_xref="GeneID:498400"
                     /db_xref="RGD:1565447"
                     /translation="MATAQLSHNPRTLKASKKTIFPSQITNERESLVMVKKLFATSIS
                     CITYLRGLFPESSYRDRYLDDLSLKILREDKKCPGSLHIIKWIQGCFDALEKRYLHMA
                     VLTLYTNPKEPEKVTEIYQFKFKYTKKGTSMDFDSSSTSFESGAHSKDVKKACSLLIR
                     QLYVLMQNLGPLPNDVILTMKLHYYNSVTPHDYQPPGFKEGVNSHFLLFEGEPVSLQM
                     GSVSSDFHSMKLKVTTEATRMLDGENSVGQDDSTTGIAPQGIDCVSQDNGTTEIAHQG
                     LDWDEEEEASSSQVQRMNFVHIEPSFESTRKKRKVSEPVTIFIPNRK"
ORIGIN      
        1 ttaatatagc caagttttag ccgcataatt aaacactact gtgaagtaga ttacagtggg
       61 gtccaagcct aggaaagaga taaaagatgt gccctaggac tgcaaagctc tctggttgag
      121 cccaagcctt tccaggctct agctagggat accagctctg cctcaggtct tggagaattc
      181 ccatcggggt actggcccca tcagccacac cgtgcctccc ctcaatcagt tctggtccag
      241 agcagatgcc ccctcacaca ttcagcagtc cctcgaaggt tccaggagct ccctacactt
      301 acttttaggg caagagaatg caggccccgc ccacagcccg ggtaggctag gccccgccca
      361 cagcccgggt gggcaggctg ccttctgccc tattttgcat attcatgagg tagagccagg
      421 caggctaagg ggtaaaccta agagttacga attattcatg aagagactcc tgtggcctgg
      481 ccggaaagtc gtaaagctaa ggggcgggct ttatgctggg aaaagccgtt ggcctcggct
      541 gaggtgaagg cctcaccgcg tgtccatacg ctgggggtct ccagagacag gcgttcgggt
      601 gggttctgtg gtcttcgagt tcagacttct ttgttctttt taattgagag gtttgatttg
      661 gaagtatttc gtggaactcg aaagccctca gagtagaagt ataatcgtgt tggggggatg
      721 ccaagtagga ccggaagctg cagatggaga aactgaggcc cacatcttgt ccagggttac
      781 atagtgaact gcaccctgcg atgtgatctt aggcaggttg gagttgttga acgaatcctg
      841 attcattctc acgatggcta ctgctcagct ctctcacaac cccagaacac tgaaggcatc
      901 taagaaaaca attttcccat cccaaatcac aaatgagcgt gagtcactgg tgatggtgaa
      961 gaaactcttt gccacctcta tctcgtgtat aacgtatctg aggggcctgt ttccagagag
     1021 ctcttacaga gatcgctatt tggatgacct cagtttaaaa attctccggg aagacaaaaa
     1081 gtgtcctggg tcattacata ttattaaatg gattcaaggt tgttttgatg ctttggaaaa
     1141 gagatacctg cacatggcgg tgttaacact ttacacaaat cccaaggaac cggagaaagt
     1201 gactgagata taccaattca aattcaaata cacaaaaaag ggaaccagta tggactttga
     1261 cagcagcagc acgagctttg aaagtggggc acacagtaaa gatgttaaga aagcctgctc
     1321 cctactcatc cgccagttgt atgtcctgat gcagaacctt ggaccccttc ctaatgatgt
     1381 catactcact atgaaactcc actattataa ctcagtgacc ccacatgatt accaaccccc
     1441 tggttttaaa gaaggggtga attcacactt cctattgttt gagggtgagc ccgtgagcct
     1501 tcaaatgggt tcagtctcct ctgactttca cagcatgaaa ttaaaagtca caactgaggc
     1561 caccagaatg ctggatgggg agaacagtgt cggtcaggac gacagcacta ctgggatagc
     1621 ccctcagggt atagactgtg tcagtcagga caacggcact actgagatag cccatcaggg
     1681 tctagactgg gatgaggaag aggaggcctc cagcagccaa gttcaaagaa tgaattttgt
     1741 gcacattgag ccaagttttg aaagcaccag gaagaagagg aaggtcagcg aaccagtgac
     1801 aatcttcatt ccaaacagaa aatgaaacag gtgcctttgc tacgcctgtt tgcaaaaaca
     1861 tgaaatgtcg taacaggagt caccaaaact ttttcctaaa gcttttgctc aatttttgac
     1921 tcagtttgtg aaggggctaa gctattgagc aggtcctggg ttcgcttctc cagaaggaaa
     1981 caagatcacc agagctgcct tggcctggca ttatctcacg gccgagttag agatgagaca
     2041 tgctttgtgc ttgcacgaaa acccagcagt tattttggga agaaatagct gctgttctta
     2101 aagaaaaggc ttttctttac ataattcagt tctccaggta tctcgactgc tgtgaactac
     2161 tctgacttgt tataacctgt gtgtgggaat ccttctgtag ctttagtaaa gctcacacac
     2221 acagagccgc ataggacgtc tgaaggtgct tagcccagtg tgagttatat gttgacttca
     2281 gtctcaaggt tgatgaggag cgtgcaggtc ctgatgccct ccctgtaaac ctcctcagct
     2341 ctgcctcagg cccttttgtt ggccaatccc aaaagctgac atgcagttca ggggcctggt
     2401 tcccttgtaa gacctatgtt gagtgttttc cccaaaatac ctgcctttat cagtctgtaa
     2461 cttgcaggtg atgctatttg tcctctccat attctggaag aattttgata ggcttaatga
     2521 ttaatgtaaa atgaataata aatgacttaa agaa
//
