LOCUS       NM_001305220            2378 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus heterogeneous nuclear ribonucleoprotein U-like 2
            (Hnrnpul2), mRNA.
ACCESSION   NM_001305220 XM_001073417 XM_219560
VERSION     NM_001305220.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2378)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 2378)
  AUTHORS   Winteringham,L.N., Endersby,R., Kobelke,S., McCulloch,R.K.,
            Williams,J.H., Stillitano,J., Cornwall,S.M., Ingley,E. and
            Klinken,S.P.
  TITLE     Myeloid leukemia factor 1 associates with a novel heterogeneous
            nuclear ribonucleoprotein U-like molecule
  JOURNAL   J Biol Chem 281 (50), 38791-38800 (2006)
   PUBMED   17008314
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Mar 4, 2015 this sequence version replaced
            XM_219560.8, XM_001073417.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.5992.1,
                                           SRR26643297.4557.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-625               JAXUCZ010000001.1  215142750-215143374
            626-761             JAXUCZ010000001.1  215145547-215145682
            762-838             JAXUCZ010000001.1  215145974-215146050
            839-978             JAXUCZ010000001.1  215146551-215146690
            979-1069            JAXUCZ010000001.1  215147205-215147295
            1070-1182           JAXUCZ010000001.1  215147392-215147504
            1183-1446           JAXUCZ010000001.1  215147898-215148161
            1447-1569           JAXUCZ010000001.1  215148423-215148545
            1570-1698           JAXUCZ010000001.1  215148884-215149012
            1699-1867           JAXUCZ010000001.1  215149709-215149877
            1868-2068           JAXUCZ010000001.1  215152858-215153058
            2069-2142           JAXUCZ010000001.1  215153973-215154046
            2143-2250           JAXUCZ010000001.1  215154312-215154419
            2251-2378           JAXUCZ010000001.1  215154541-215154668
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2378
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /note="heterogeneous nuclear ribonucleoprotein U-like 2"
                     /db_xref="GeneID:309197"
                     /db_xref="RGD:1562784"
     exon            1..625
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     CDS             94..2331
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein U-like
                     protein 2"
                     /protein_id="NP_001292149.1"
                     /db_xref="GeneID:309197"
                     /db_xref="RGD:1562784"
                     /translation="MEVKRLKVTELRSELQRRGLDSRGLKMDLAQRLQEALDAEMLED
                     EAGVGGAGPGGACKAEPRPVAASGGGPGGDEEEDDEEEEEDEEALLEEEDEEPPPAQA
                     LGQAAPPPPEPPETSAMEAEPEASDIPAEATAGSGGVNGGEEHDNGKGEEDGPEERSG
                     DETPGSEAPGDKAVEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREE
                     AYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLW
                     SGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSIDFSCSQLGEDEFSYGF
                     DGRGLKAENGQFEEFGQTFGENDVIGCFANFETGEVELSFSKNGEDLGVAFRISKESL
                     GDRALLPHVLCKNCVIELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEEC
                     EVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLTQMRMKGLEEPEMDPKSRDL
                     LVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEED
                     WKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYK
                     EEARKLLPPSEKRTNRRNNRNKRNRQNRSRGQGYVGGQRRGYDNRAYGQQYWGQSGNR
                     GGYRNFYDRYRGDYERFYSRDYEYNRYRDYYRQYNRDWQNYYYHHQQDRDRYYRNYYG
                     YQGYR"
     exon            626..761
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            762..838
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            839..978
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1069
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1182
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1446
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1569
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            1570..1698
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..1867
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            1868..2068
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            2069..2142
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            2143..2250
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
     exon            2251..2378
                     /gene="Hnrnpul2"
                     /gene_synonym="Hnrpul2; RGD1562784"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggcggaggc gggcggcggc gcctgcgcgg tcgggctcgg tcgacagttc gcaggggagg
       61 aggcggcggg aggcggagga ggcggcggcg gcgatggagg tgaagcggct gaaagtgacc
      121 gagctgcggt cggagcttca gcggcggggc ctggattcgc gcggcctcaa aatggatctg
      181 gctcagcggc ttcaggaggc actggatgct gagatgttgg aggacgaggc tggcgttggt
      241 ggggccgggc ccggcggggc ctgcaaggcg gagcctcggc ctgtggccgc gtcgggcgga
      301 ggcccgggcg gggacgagga ggaggacgac gaggaggagg aggaggacga ggaggcgctg
      361 cttgaggaag aagacgagga gccaccacct gctcaggctt tgggccaggc cgcgccgccg
      421 cctccggaac ccccggagac gtcagccatg gaggccgagc ccgaagcttc cgacataccg
      481 gcggaggcca cggccgggtc aggtggggta aatggtggcg aagagcatga caacggcaag
      541 ggggaggaag acgggccgga ggaacggagc ggagacgaga ctcccggatc cgaggcaccg
      601 ggtgacaagg ccgtagagga acaaggagat gaccaagata gtgaaaagtc aaaaccagca
      661 ggctcagatg gtgagcggcg gggggtaaag agacagcggg atgagaagga tgaacatggc
      721 cgagcttact atgaattccg agaggaggct taccacagcc gctcaaagtc cccaccacct
      781 ccagaagaag aagcaaaaga tgaagaggag gatcagacgc ttgtgaacct ggacacgtat
      841 acctcggatc tccattttca aataagcaaa gaccgatatg gaggccagcc acttttctca
      901 gaaaaattcc ctaccctttg gtctggggca agaagtactt atggagtaac aaagggaaaa
      961 gtatgctttg aggccaaggt aactcagaat ctcccaatga aagaaggctg cacagaagtc
     1021 tccctccttc gagttgggtg gtctattgat ttctcctgtt ctcagcttgg tgaagatgaa
     1081 ttctcctatg gttttgatgg aagaggactc aaggcagaga atgggcaatt tgaggaattt
     1141 ggccagacct ttggggaaaa tgatgttatt ggctgttttg ctaattttga gacaggagaa
     1201 gttgaacttt ccttctccaa aaatggagaa gacctgggtg tggcattccg aatcagcaag
     1261 gaatctctag gagatcgagc ccttctaccc catgtccttt gcaaaaattg tgtcatagaa
     1321 ttaaactttg gtcagaagga ggagcccttt ttcccaccac cagaagagtt tgtgttcatc
     1381 catgctgtac ctgttgagga acgtgtgcgg actgcagtcc ctcccaagac catagaggag
     1441 tgtgaggtga ttctgatggt gggacttcct ggatctggaa agacccagtg ggcactgaaa
     1501 tatgcaaaag agaaccccga gaaaagatac aacgtcctgg gagctgagac tgtgctcaca
     1561 caaatgagga tgaaggggct tgaggagcca gagatggacc ccaagagtcg agacctctta
     1621 gttcagcaag cctcccagtg ccttagtaag ctggtccaga ttgcttcacg gtcaaagagg
     1681 aactttattc tcgatcagtg taatgtgtac aactctggcc aacgaaggaa gttattgctg
     1741 ttcaagacct tctccaggaa agtggtggta gttgttccta atgaggaaga ctggaagaaa
     1801 aggctggagt tgaggaaaga agtggaggga gatgatgtgc ctgagtctat aatgctggag
     1861 atgaaagcca acttctctct gcctgagaaa tgcgactata tggatgaggt gacatatggg
     1921 gagctggaaa aagaggaagc tcagcccatt gttactaaat acaaggagga agcaaggaag
     1981 ctgctgcccc cctctgagaa gcggacaaac cgccggaaca accgcaacaa gagaaaccgg
     2041 cagaaccgaa gccgaggcca aggctatgtg ggcgggcagc gccgaggcta cgacaaccgg
     2101 gcctacgggc agcagtactg ggggcagtct ggaaacagag ggggctaccg taatttctat
     2161 gatcgataca ggggtgacta tgaacgattc tacagtcgag attatgaata caacagatac
     2221 agagactatt acagacaata caaccgggat tggcagaatt actactacca ccaccaacag
     2281 gacagagacc gatactacag gaattactac ggttaccaag ggtatcggtg aagcccctgc
     2341 tgttttcgcc tgtcagccat gaagctgagt ctctgggg
//
