LOCUS       NM_001108532            1879 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus heterogeneous nuclear ribonucleoprotein H3
            (Hnrnph3), mRNA.
ACCESSION   NM_001108532 XM_001074684 XM_342131
VERSION     NM_001108532.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Todd,M.A. and Picketts,D.J.
  TITLE     PHF6 interacts with the nucleosome remodeling and deacetylation
            (NuRD) complex
  JOURNAL   J Proteome Res 11 (8), 4326-4337 (2012)
   PUBMED   22720776
REFERENCE   2  (bases 1 to 1879)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1879)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1879)
  AUTHORS   Buhrke,T., Lengler,I. and Lampen,A.
  TITLE     Analysis of proteomic changes induced upon cellular differentiation
            of the human intestinal cell line Caco-2
  JOURNAL   Dev Growth Differ 53 (3), 411-426 (2011)
   PUBMED   21492153
REFERENCE   5  (bases 1 to 1879)
  AUTHORS   Mauger,D.M., Lin,C. and Garcia-Blanco,M.A.
  TITLE     hnRNP H and hnRNP F complex with Fox2 to silence fibroblast growth
            factor receptor 2 exon IIIc
  JOURNAL   Mol Cell Biol 28 (17), 5403-5419 (2008)
   PUBMED   18573884
  REMARK    GeneRIF: These results establish hnRNP H and hnRNP F as being
            repressors of exon inclusion and suggest that Fox proteins enhance
            their ability to antagonize ASF/SF2.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473988.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342131.3, XM_001074684.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..1879
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /note="heterogeneous nuclear ribonucleoprotein H3"
                     /db_xref="GeneID:361838"
                     /db_xref="RGD:1310019"
     exon            1..135
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1064
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /note="heterogeneous nuclear ribonucleoprotein H3 (2H9)"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein H3"
                     /protein_id="NP_001102002.1"
                     /db_xref="GeneID:361838"
                     /db_xref="RGD:1310019"
                     /translation="MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPN
                     GITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDP
                     PRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYG
                     YGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPL
                     NPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG
                     MGGSGMGGYGRDGMDNQGGYGSVGRMGMGNSYSGGYGAPDGLGGYGRGGGGSGGYYGQ
                     GGMSGGGWRGMY"
     exon            136..274
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            275..459
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            460..546
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            547..662
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            663..798
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            799..894
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            895..987
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1879
                     /gene="Hnrnph3"
                     /gene_synonym="Hnrph3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catttaaatc aagcggtatt gaaatggatt gggttatgaa acataatggt ccaaatgacg
       61 ctagtgatgg gacagtgcga cttcgtggac tgccatttgg ttgcagcaaa gaggaaatag
      121 ttcagttctt tcaagggttg gaaatcgtgc caaatgggat aacattgacg atggactacc
      181 aggggagaag cacaggggag gccttcgtgc agtttgcttc aaaggagata gcagaaaatg
      241 ctctggggaa acacaaggaa agaatagggc acaggtatat tgagatcttc aggagtagca
      301 ggagtgaaat caaaggattt tatgatccac caagaagatt gctgggacag cgacctggac
      361 catatgatag accaatagga ggaagagggg gttattatgg agctgggcgt ggaagtatgt
      421 atgacagaat gcgacgagga ggtgatggat atgatggtgg ctatggaggt tttgatgact
      481 atggtggcta taataattac ggctatggga atgatggctt tgatgacagg atgagagatg
      541 gaagaggcat gggaggacat ggctatggtg gagctggtga tgcaagttca ggtttccatg
      601 gtggtcattt tgtgcacatg agagggctgc cttttcgtgc gactgaaaat gatattgcta
      661 atttcttctc accactcaat ccaatacgcg ttcatattga tattggagcc gatggcagag
      721 caacaggaga ggcagatgta gagtttgtga cacatgaaga tgcagtggct gccatgtcta
      781 aagataaaaa caacatgcaa catcgataca ttgaactctt cttgaattcc acccctggag
      841 gtggctctgg aatgggaggt tctggaatgg gaggctatgg cagagatgga atggataatc
      901 aaggaggcta cggatctgtt gggaggatgg gaatggggaa cagctacagt ggaggctatg
      961 gtgctcctga tggcttggga ggctatggtc gtggtggtgg aggcagtgga ggttactatg
     1021 ggcaaggtgg aatgagtgga ggtggatggc gtgggatgta ctgacaacac caccccaacg
     1081 tacacgtcct aacaccggct ctactagact ttcttacaaa tttcttttgt atttcaagaa
     1141 ctttataatg actgaaggaa tgtgttttca agatattatt tggtaaaaca acaaactgtg
     1201 atgggaaaat ctgttttctg taggttttat ttgttgcata ctttgactta aaataaattt
     1261 ttatattcaa accactgatg ttgctacttt ttatatatag gtactcctaa agatgtgctg
     1321 ccttcgtaag atttgggatg atgtatttta ctgttaacat agggcagtgt tagagggcaa
     1381 gactgcaagt aggcatctgg gatagcgcta actttcactc ctggacatat gtaaataaaa
     1441 gcctaaagat agatctaggg ggttcaagaa tataagttag tattctcttt tcagtcttgt
     1501 ttatcaagca tagctctgaa taatttaaga ggtatctgga ttctaaatat tcacaattgt
     1561 attatgaacg ggggagggag gtaggagtat tgaaattata gcttgagatt ttaaaaccct
     1621 catagcactt gactaagata ccaaaaatgt tcccaaaact tgagtctgtc ggagtagttt
     1681 gagtattttc agtttctcac ctaagaaaat agggtcttca atggtgtaaa tgacatttaa
     1741 gaaaatgtaa aacaatgctg tagctggttt tgtgtctgaa actggctttg agtagttaag
     1801 tgctctgtat aacaaaggaa aggtgctttc tactaatctt ttatcacttt ggtcaataag
     1861 acattttccc taaattggc
//
