LOCUS       NM_001401451            4499 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus heterogeneous nuclear ribonucleoprotein D-like
            (Hnrnpdl), transcript variant 5, mRNA.
ACCESSION   NM_001401451 XM_008770024
VERSION     NM_001401451.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4499)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 4499)
  AUTHORS   Akagi,T., Kamei,D., Tsuchiya,N., Nishina,Y., Horiguchi,H.,
            Matsui,M., Kamma,H. and Yamada,M.
  TITLE     Molecular characterization of a mouse heterogeneous nuclear
            ribonucleoprotein D-like protein JKTBP and its tissue-specific
            expression
  JOURNAL   Gene 245 (2), 267-273 (2000)
   PUBMED   10717477
REFERENCE   4  (bases 1 to 4499)
  AUTHORS   Tsuchiya,N., Kamei,D., Takano,A., Matsui,T. and Yamada,M.
  TITLE     Cloning and characterization of a cDNA encoding a novel
            heterogeneous nuclear ribonucleoprotein-like protein and its
            expression in myeloid leukemia cells
  JOURNAL   J Biochem 123 (3), 499-507 (1998)
   PUBMED   9538234
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Feb 11, 2022 this sequence version replaced XM_008770024.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1702789.1,
                                           SRR26643292.51104.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1129              JAXUCZ010000014.1  9861716-9862844
            1130-1298           JAXUCZ010000014.1  9863560-9863728
            1299-1460           JAXUCZ010000014.1  9863817-9863978
            1461-1592           JAXUCZ010000014.1  9864327-9864458
            1593-1707           JAXUCZ010000014.1  9864564-9864678
            1708-1875           JAXUCZ010000014.1  9864910-9865077
            1876-4499           JAXUCZ010000014.1  9865322-9867945
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..4499
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /note="heterogeneous nuclear ribonucleoprotein D-like"
                     /db_xref="GeneID:305178"
                     /db_xref="RGD:1309950"
     exon            1..1129
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
     CDS             687..1946
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /note="isoform 2 is encoded by transcript variant 5;
                     hnRNP-DL; hnRPD-like protein; hnRNP D-like"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein D-like
                     isoform 2"
                     /protein_id="NP_001388380.1"
                     /db_xref="GeneID:305178"
                     /db_xref="RGD:1309950"
                     /translation="MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRAPRQLAPLLPS
                     LASSSSRQGARRTQRHVTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAA
                     PGTRTARQHPLADGSATMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTS
                     KKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
                     DPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF
                     CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGG
                     ARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGY
                     TDYSGQQSTYGKASRGGGNHQNNYQPY"
     exon            1130..1298
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1460
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
     exon            1461..1592
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
     exon            1593..1707
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
     exon            1708..1875
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
     exon            1876..4499
                     /gene="Hnrnpdl"
                     /gene_synonym="hnRNP DL; Hnrpdl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acaaagaagc gaatacccga gcccggagcc cggaaccccg agcgcgggcg ccggccctcc
       61 gcagcctggt ggagcccgcg caggaggccc ggggcgcgtg cagacgggag tcccttgagt
      121 ggcgcgcccg ggacgtgagt gccccttgcc ttccccggca cctgacccct tccccgccca
      181 ccgcgtgcgc tttggcacat cttcagtcat ccgagcaggc cccgccctcc gccgcggcct
      241 cggccagccc gggagaacgc acggacccgg ctgcggagat cctgcagcgg aggccctctg
      301 agccaacgcc gcccacgcca gaacggaggc ggtcatcgcg gacccgcttt tctgctccgc
      361 tgattccagc cggcgcgagg acaaaacacg cgtgcgccgg gagggcgggc gggcgggagc
      421 gctgcagctt cggcgagcgg cgctaggtgc acgccaccct ttgctggagc agccgccgcc
      481 gcagctctgc actgggagac tgagggcgca gcaagggact gagtcgaact ggacgccgaa
      541 cgcaaacgat tctcaaggca agaggaactg tggccctgcg acagcgccgc tcgggattcc
      601 ctgcccttcg gtcctgctgc actgattttc ccgttatctc agcccggccc tctggcgcga
      661 ccttgctcct cacccggagc cccgcgatgg aggtcccgcc ccggctctcc catgtgccgc
      721 cgccattgtt cccctcggct cccgctactt tagcctcccg cagcctttcc cattggcggc
      781 cgcgggctcc gcggcagctc gcccctctcc tcccttcgct cgcttccagc tcttcccggc
      841 agggggcgcg ccggacccag cgccacgtca ccgcccagca gccctcccga ttggcgggcg
      901 gggcagctat aaagggaggg cgcaggcggc ggccggatct cttccgccgc cattttaaat
      961 ctagctccat acaacgctcc gccgccgctg cccccgggac ccggactgcg cgccagcacc
     1021 cccttgccga cggctccgcc accatggagg acatgaatga gtacagcaac atagaggagt
     1081 tcgcagaggg atccaagatc aacgcgagca agaaccagca ggatgacggt aaaatgttta
     1141 ttggaggctt gagctgggat acaagcaaga aagatctgac tgaatatttg tctcggtttg
     1201 gggaagttgt agactgcaca attaaaacag atccagtcac tggaagatca agaggatttg
     1261 gatttgtgct tttcaaagat gctgctagtg tggataaggt tttggaactg aaggaacaca
     1321 aactggatgg caaattgata gaccccaaaa gggccaaagc tttaaagggg aaagaacccc
     1381 ctaaaaaggt ttttgtgggt ggattgagtc cagatacttc agaagaacaa attaaagaat
     1441 attttggagc cttcggagag atagaaaaca ttgagctgcc catggatacg aagactaatg
     1501 agagaagagg attctgtttt atcacataca cagacgaaga gccagtaaag aaactgttag
     1561 aaagcagata ccatcagata ggctctggga agtgtgaaat caaagttgca caacccaaag
     1621 aggtgtacag gcagcagcag cagcaacaga aaggtggaag aggggctgcg gctggtggaa
     1681 gaggtggtgc taggggacgc ggaagaggtc agggccaaaa ctggaaccaa ggatttaata
     1741 actattatga tcaaggatat ggaaattata atagtgccta tggtgatgag agctatagtg
     1801 gctatggcgg ctatgactat acggggtata actatgggag ctatggatat ggacagggat
     1861 atacagacta cagcggtcag cagagcactt atggcaaggc atcccgaggg ggtggcaatc
     1921 accagaacaa ttaccagccc tactaaagga ggacgctggg agagcaggtg tgtgaggcta
     1981 caggaaaaca ttggcaatgg ctaatttaac ttaaagatga atagacaaat gaacgatatg
     2041 agtaaactat gttgcgtagt ccttgctaaa ttgttaatgt gtaatcgctt tataagcctg
     2101 ttttgcctaa agtgtctata gatctttaac tttaaggttt tacctcacct tttttagaat
     2161 tacagaaaaa cttaagagtt tttctgtttg ctttgtgtac caggaggtgt agaggaataa
     2221 ttaaactttt ttagaactat taacaggtaa agtactgaaa tgggtacaac ttaaggaaaa
     2281 ccagaatgtt gtcttctaac tctgacatta taccttgttt gtacccgcca gcgggaactt
     2341 cattgcaggc cgtgtgtcac cctgaccacg tctatctctg ggggtcgcac gttgcgggca
     2401 gagcgcaagg catacaccag aaaacgctgt cctgtggtat ggtctcttcc aacttcatgt
     2461 accagcgtaa agattaaagt ggaaaaccag actttggctg cttttttaat ctttttggag
     2521 actaagtgtc taaacttaac ttaaatggtt ttttacagga gttaaagtac ataaatgcct
     2581 ttttacagct taatcatttt ggtcttctgt ttagtgttgt atttcaattg tggagcctca
     2641 ttttaagtgt tcattcttta agatttaatg cttgcttttt ctttttatag ctaatagtga
     2701 aatctacaaa ccaaaacaag aacttttaaa tctgggatgt aagttaaaga tcatatgcac
     2761 aaagcaattg gctctcacta tgtgtcctaa ctatggcagc tgccgggaat tcattggtag
     2821 cactccagtt ggctcacctg atgcttctgg ttggccctca cctgttagac tcataacagg
     2881 gaagattgca ttcccatgtt ctaagttgaa tccgttcagt gtcgttggaa ctccagcgag
     2941 tttcaatccc caaactgtgc tttgctggtc actatgcatg tgatctttaa ttgaagtgag
     3001 gacttaaagc agttcatgaa agtggacctt ttacaagctt gtggggaccg cacacatcta
     3061 atgggtgttt tgtttttgtt ttaggaggtg taaagaaacc atcttacagg acgacattga
     3121 aggttgcttg atcttctgtt gacctaagat gattattttg taaagacttt gtagtgtaca
     3181 tgacacaatt gtgtcccact gtacatagct gccaattagt tcctttgtta atctgtcctt
     3241 tgttccttcc ctgtgttatg actcaatgtg gatttgtgtt tatacaaatt tttatttgtg
     3301 tgacttcatg ttcaacctca aataaatgct tccttatgtg attgtttttc tgcgtcaggt
     3361 actgcatagt tctgtggaaa tgtaatttta taaagaagca ataacttaag gcgcagcttg
     3421 ttttgtaggg ggtattggtc cacagaagag actgctcatg gtatctcctt gtctctggtt
     3481 tctgtgggtg ttattctgta cttaaagtct aatgcttttt ctctgttgat tccttccaca
     3541 cctttggaat aatgtttccc cctgggtatc tggagactga cactagtctg ttttgattgg
     3601 tgacacgtgg tgtgcttttg gattatggtt ctaagggaag caccttgctg ggctaggctg
     3661 tacctcactg gcaagtattc tttgccggag cacaaatgat gcccttgttt ctgtccctca
     3721 ctgttgaaat gaacctgttg gctaccacaa agcttgtcag ttgactacct ttgctctatg
     3781 cctatctgac aaaccatgtg taattcacag atgactttaa agagctggtg gtttgtctgt
     3841 tagatcagag gtaaatgcag aggaagaacg ctgtccaact ggtgcccaga tcatcagttt
     3901 catctgggat tagccactaa gtgggtgcag tggggtgagt ttgtcccacc acagtacctg
     3961 agctaaacag aacagtttga tattgaggcg gggtgggggg ggcgagttgt ggaaagttac
     4021 atggtgtgta tcttgtggtg catttaaaac tttaaggatt taacagtaat acaggctttg
     4081 ggttttttcg ggaaatgttg ggcttagagg tctccacggt tccacaaaag cttctgggtt
     4141 tggggggtat gtttagagtg cctggtctta gaccagtgta agctttttat actgatacct
     4201 ttttttaaat gcctacgact ttgttccatg atatttgtac ttgctagcaa ggctgtcaag
     4261 ttaccatgcc ttggcctgat tttcctctgg cctggtacca gtgttggcca ttaaaaaaga
     4321 actgtttgtt tcaacttgca gccagaaagt agaagggaga tcatttcaca ttgttagtag
     4381 gtacagtatc cagagaaaga tacctgtgag ttcaagctta caattaggtg acaagttgac
     4441 attgagattg tcatttcccc tgatcaaaat gaataaagtc tttttaaaat aaaacctaa
//
