LOCUS       XM_039093112            2264 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus heterogeneous nuclear
            ribonucleoprotein C (Hnrnpc), transcript variant X5, mRNA.
ACCESSION   XM_039093112
VERSION     XM_039093112.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093112.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2264
                     /gene="Hnrnpc"
                     /gene_synonym="hnRNP C; Hnrpc"
                     /note="heterogeneous nuclear ribonucleoprotein C; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 79 ESTs, 10 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 177 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:290046"
                     /db_xref="RGD:1309982"
     CDS             695..1636
                     /gene="Hnrnpc"
                     /gene_synonym="hnRNP C; Hnrpc"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein C
                     isoform X1"
                     /protein_id="XP_038949040.1"
                     /db_xref="GeneID:290046"
                     /db_xref="RGD:1309982"
                     /translation="MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIV
                     GCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAA
                     EMYGSVPEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQR
                     VSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSLLESLEKI
                     EKEQSKQADLSFSSPVEMKNEKSEEEQSSASVKKDETNVKMESEAGADDSAEEGDLLD
                     DDDNEDRGDDQLELKDDEKEPEEGEDDRDSANGEDDS"
ORIGIN      
        1 ctgactttcg ctggtttcct ttttattgtt gttacttact agttattatt actatactta
       61 taatggtgat gatgatgatg ataatgattt ttaaacggat taaagtggag tttttctgaa
      121 tgttaagatt tcttcagcct cctgattgac tttggagttt tccatcttgg gagagaaagt
      181 gaaggtgtta gcatttttaa gtagtttgat cacataaacc ttttctctcc caacccaccc
      241 ttgccctcaa ccccttcccc acactggaaa taattttact ggctgttaag tctttgacct
      301 tatttttcct gatctttaac ttaactgttt tagagcatct ctggacgtct gtatttttaa
      361 ttttttttat ttttattttt tttcttttta atctttgatt tgttagattt ttaaactgtg
      421 ctgcaataaa atgtgtgtgg tactatttaa cacctataag ggtgatggca ttttcctaga
      481 aagccatctt cctactgttt cccttgaaat cccatcctgc ttttcctgta cactacccct
      541 cacaaaccac aagccgcagc aacatggatg cccagtctgg agcagcaaca gccaggatga
      601 cctggagcca ggggggcctt cggaacagat gtgcaccctt cctgggtgat ggtaagagtt
      661 ttcagctttg tgagaaacct tactatcaga ggagatggct agcaatgtta ccaacaagac
      721 agatcctcga tccatgaatt cccgtgtatt cattgggaat ctcaacactc tggtggtcaa
      781 gaagtctgat gtggaggcca tcttttcaaa gtatggcaaa attgtgggtt gctctgtgca
      841 taagggcttt gcctttgtcc agtatgttaa tgaaagaaat gcccgagctg ctgtagctgg
      901 agaggatggc agaatgattg ctggccaggt tttagatatt aacctggctg cagagccaaa
      961 agtgaaccga ggaaaagcgg gtgtgaaacg atctgcagcg gagatgtacg ggtcagtacc
     1021 agaacaccct tctccgtccc ctctactcag ttcctcattt gacttggact atgactttca
     1081 acgcgattat tatgacagga tgtacagtta cccagcacgt gttcctcctc ctcctcccat
     1141 tgctcgagct gtggtgcctt ccaaacgcca gcgtgtgtcg gggaacacct cacgaagggg
     1201 caaaagtgga ttcaattcaa agagtggaca acggggatct tcttccaaat ctggaaagtt
     1261 gaaaggtgat gaccttcagg ccattaaaaa ggagctgact cagataaaac aaaaagtgga
     1321 ttctctgctg gaaagcctgg aaaaaattga aaaagaacaa agcaaacaag cagacttgtc
     1381 cttctcgtcc ccagtagaaa tgaagaatga aaagtctgaa gaggagcaga gcagtgcctc
     1441 tgtgaagaaa gatgagacta atgtgaaaat ggagtctgag gcaggtgcag atgactctgc
     1501 tgaggagggc gacctgctgg atgatgacga taatgaagat cggggggatg accagctgga
     1561 gttgaaggat gatgaaaaag agcctgagga aggagaagat gacagagata gcgccaatgg
     1621 ggaggatgac tcttaagcac atagtggagc ttagaaatct taacccatta ttcacttacc
     1681 taggcgcttg tgagagatca aagtaacacc agatcctctc ccctagaatc ttctgcacat
     1741 tctcactgtt ctccctcctt atccttcctg tgttcattaa ttcataattg ccctgcgcct
     1801 agttccattt tcacttcctg tgatgctcct tagtagtttt gttaagtctt accctgtaag
     1861 ttttgcttta attttgatac ctctttgact taacaataaa aagttgtatg gtttttatca
     1921 actgtctcca aaataatctc tcgttatgca gggagtacag ttattcccgt tcacgattgc
     1981 agtagtcgct tccctaactg cagaggcatc tcctttactt gtaaccctga gagcagcttt
     2041 gcattagagg cgtgtgtttt ccctcacacg agtgggactg ttactacaca atggaaccat
     2101 gtatttttgt gaatggggtt ggcatgtcaa atgcatctta caggaaaata gtgttatagt
     2161 cttaatattt gttttctaaa gttataccat gggttatttt tgtgaacagc ctgatgtttg
     2221 ggatcttttt ctcaaaaata aacaattcct tattaaacca ggaa
//
