LOCUS       NM_001415088            3907 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus hepatocyte nuclear factor 4, gamma (Hnf4g),
            transcript variant 1, mRNA.
ACCESSION   NM_001415088 XM_006232165
VERSION     NM_001415088.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3907)
  AUTHORS   Okegawa T, Ushio K, Imai M, Morimoto M and Hara T.
  TITLE     Orphan nuclear receptor HNF4G promotes bladder cancer growth and
            invasion through the regulation of the hyaluronan synthase 2 gene
  JOURNAL   Oncogenesis 2 (7), e58 (2013)
   PUBMED   23896584
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3907)
  AUTHORS   Ozeki T, Takahashi Y, Nakayama K and Kamataki T.
  TITLE     Hepatocyte nuclear factor (HNF)-4 alpha/gamma, HNF-1 alpha, and
            vHNF-1 regulate the cell-specific expression of the human
            dihydrodiol dehydrogenase (DD)4/AKR1C4 gene
  JOURNAL   Arch Biochem Biophys 405 (2), 185-190 (2002)
   PUBMED   12220531
REFERENCE   3  (bases 1 to 3907)
  AUTHORS   Taraviras S, Mantamadiotis T, Dong-Si T, Mincheva A, Lichter P,
            Drewes T, Ryffel GU, Monaghan AP and Schutz G.
  TITLE     Primary structure, chromosomal mapping, expression and
            transcriptional activity of murine hepatocyte nuclear factor 4gamma
  JOURNAL   Biochim Biophys Acta 1490 (1-2), 21-32 (2000)
   PUBMED   10786614
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000067.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001415088.2.
            
            On Dec 21, 2022 this sequence version replaced XM_006232165.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760494 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-195               JACYVU010000067.1  12978646-12978840   c
            196-367             JACYVU010000067.1  12975491-12975662   c
            368-462             JACYVU010000067.1  12972780-12972874   c
            463-569             JACYVU010000067.1  12970074-12970180   c
            570-725             JACYVU010000067.1  12968225-12968380   c
            726-813             JACYVU010000067.1  12965230-12965317   c
            814-966             JACYVU010000067.1  12962121-12962273   c
            967-1203            JACYVU010000067.1  12961780-12962016   c
            1204-1326           JACYVU010000067.1  12958691-12958813   c
            1327-3907           JACYVU010000067.1  12953395-12955975   c
FEATURES             Location/Qualifiers
     source          1..3907
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q23"
     gene            1..3907
                     /gene="Hnf4g"
                     /note="hepatocyte nuclear factor 4, gamma"
                     /db_xref="GeneID:365744"
                     /db_xref="RGD:1310102"
     exon            1..195
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..1448
                     /gene="Hnf4g"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="hepatocyte nuclear factor 4-gamma isoform 1"
                     /protein_id="NP_001402017.1"
                     /db_xref="GeneID:365744"
                     /db_xref="RGD:1310102"
                     /translation="MCVSELMMRVSEPILEMAMGNYSEVLDPTYSTLEFDTMQILYNP
                     NDSSAPETTSMNTTDSGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSC
                     RFSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTYEGTNIPSINT
                     LAQAEVRSCQISVPNPSASTDINVKKIASISDVCESMKQQLLVLVEWAKYIPAFCELP
                     LDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNHYVIHRNSCEVEVSRVANRVLDE
                     LVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPGKIKNMRFQVQISLEDYINDRQYD
                     SRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGAANDGGHPHH
                     PMHPHLSQDPLTGQTILLGPMSTLVHTDQIATPETPLPSPPQGSGQEQYKITANQASV
                     ISHQPLSKQKQL"
     exon            196..367
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            368..462
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            463..569
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            570..725
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            726..813
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            814..966
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1203
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1326
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
     exon            1327..3907
                     /gene="Hnf4g"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtaatcaca gcttgaaagc ataactgcta gcacactctg agtgtgtgga tccattcgta
       61 tgtgtgtttc tgaactgatg atgagggttt cggagccgat actggaaatg gccatgggaa
      121 actacagtga agttttggac ccaacttact caaccttgga atttgacact atgcagattt
      181 tgtataatcc caatgacagt tctgccccag agacaacaag tatgaatacc acagacagtg
      241 gtgtcaactg tctatgtgcc atctgtggtg acagagcaac aggaaagcac tatggggcat
      301 ccagctgtga tggctgcaaa ggctttttca ggcgtagcat tcggaagagt cacgtttatt
      361 cctgcaggtt cagtcgccag tgtgttgttg acaaggacaa aaggaatcaa tgcagatact
      421 gtcgattaag aaaatgtttt agagcaggaa tgaaaaaaga agcggtgcaa aatgagcgcg
      481 acagaatcag cacaagaaga agcacgtacg agggcaccaa catcccctcc atcaatactc
      541 tggcacaagc cgaagtgagg tcctgccaga tctcagtccc aaaccccagc gccagcactg
      601 acataaacgt taagaaaatt gcaagcatca gtgacgtttg tgagtccatg aagcaacagc
      661 tcttagtatt ggtggaatgg gccaaataca ttcctgcctt ctgtgaattg cctttggatg
      721 accaggtggc cctattgaga gctcatgccg gggagcactt acttcttgga gctacaaaga
      781 gatccatgat gtacaaagat attttgcttc tgggaaacca ctacgttatt caccgcaaca
      841 gctgtgaagt tgaagtcagc cgtgtggcca atagagttct tgatgagctg gttagaccct
      901 tccaagagat ccagatagat gacaacgagt acgcatgctt gaaggccatt gtgttttttg
      961 acccagatgc aaagggattg agtgaccctg ggaagattaa gaacatgcgg ttccaggtgc
     1021 agatcagcct ggaggactac atcaatgacc ggcagtatga ctcgcgcggc aggttcggag
     1081 agctgctgtt gctgctgcca acccttcaga gcatcacctg gcagatgatc gagcaaattc
     1141 agttcgtcaa actgttcggc atggtcaaaa ttgacaacct cctgcaggaa atgttgctgg
     1201 gtggtgcggc caatgatggt ggtcatcccc atcacccaat gcacccacat ttgtctcaag
     1261 atccactaac tgggcaaact atacttttag gtccaatgtc cacactggtt catacagacc
     1321 agattgccac tccagaaacc ccacttcctt ccccacccca aggctctgga caagagcagt
     1381 acaaaatcac tgcaaaccaa gcttcagtca tttcacatca acccctttct aagcaaaagc
     1441 aactgtgaga tggagcttca tttcaaatgg cactgcacaa atgtgaaaca cattggtctt
     1501 caaatgtctc aggatgatac ttttgtctag tttaggcaag gcttcttcat ggtgctgttg
     1561 taagatggta tcctattttc ttgtctataa atacattttg tttattgttg ctgtaaagta
     1621 aagctttcac atgcaaccta tgtatatttg acttatacag ttatatagac tgttatatag
     1681 tgtatcattt ccaactgtcc ctgcactgtg cctgaaccac tgatgtatga cttctatttt
     1741 ttttcataat attaatttaa atttgtaaat atttgctttg gtatgatctg atgcagaacc
     1801 cagtgttctt ttggtagata agaaatgcta gttaatacaa aatcaagtaa tttttttata
     1861 atatcaaatt gtaaacttaa agatttagta gctatagaat agagtattta tctgatggag
     1921 aatacatcag ggcttgctgt ggccagcagt aaatgtgcct atgttaaatt cagagaatca
     1981 gcagcattgt aaagatgact ggtgattttc tgcaatgtga ctatatttga agaggtctgc
     2041 taaagcaaag aatgctgctg cttttagtta gcataaaggc caatggaaaa cagagaaata
     2101 tgaaaccata tttcaacaaa aaatgtgatt tatttcttat tcctaggaca tctggaaagc
     2161 cccccattca ttggaactta gcatgtctcc tgggaagtca ggagagtctt tctagagaga
     2221 tgtgtgtcag ttcacgacat ggaatgctat gggagaaagg atgctgggga gcaaattatt
     2281 gattacattt gctcaaccca cttctgattg gctttaatct gaatgtgtca caaaagaata
     2341 catgaaatta ttacagagtg cttttgtaaa cacccaatgg ctgatgatga aatattattt
     2401 gtcatggtac tcataaatat aagtaacaag tagtatttgc agtgaggaaa acagaccagt
     2461 tttgtatctc ttgcaatctt cacatcatcc cctaaagtac taaagataaa atgtacacta
     2521 gatttatttt catgacttag aaatttttgc aacatagaat tttgctgaac atttaattct
     2581 agattgagaa gtagccccaa ctacctgaga taactcatag atgggattta ttttaaaagc
     2641 actaaaagtc atcaatgtgt atctatgtat ttctctttct tctgctcctt ttccctccct
     2701 ccctcccttc ctccctccct atcgatctat atctatctat ctatctatct atctatctat
     2761 ctatctatct atctatctat tgatcgactg atctatcaat cttctatcta atctatttct
     2821 ttgtgtgtgt ctgtctgtca tgcctttctt gtttcgttcc ctctcttaca tttactgaag
     2881 cagtgaatat ggttgaatat atagctgtag aaatttatct aacatctatc aagagaaaag
     2941 agtacctcta tcttcaggat tttggattaa agttctcaag gaatcttctc aatttctcag
     3001 attatgagtc atatcctcta cctacctaat agcacaaaag tcactgtagt attaactata
     3061 ttggctctaa atatcaaata atgtgaaagc tatcagtgat ttcacagaaa cagatatatt
     3121 tactcaaaca ctatgatcct catgaaacta aaatataaca ttgatggagg atttgggaag
     3181 acaagacgag agagagagag agagagagag agagagagag agagagagag agtttcttaa
     3241 ttctgaatat tttaaacctt cactcttcag gaaattagca agttactaaa tttcatgaat
     3301 gaaatatctg taggtttttg tttacttgtt tattgttaat tcttctaaag gacaaaaagt
     3361 ctgtttggga atatatatat atatatatat atatatatat atatcataac aaaatacttt
     3421 aagctagaaa gaataaacaa cggaagtttg tttttcatag ctgtccatgt tgggaagccc
     3481 aacataaaga attatctgat gctctggttc ataggtagct gtttgtgaga tagtctcagg
     3541 gtacctcttt catgagaaca ggatgctcac tcatgtaggc tctactctca tggtctcctc
     3601 ccttcgagtt ttcccacctt tgcatatcat cacatacgtg actacatttc aacaaaaatg
     3661 tggaggctta tgggcattca agccatagaa aataatttaa aaatacaaaa ttcaaaattt
     3721 atttttagta aataatgtat caacaatgac ttattaaaca tatattttag aaactattac
     3781 taataattct gtttggaaaa ctatggtcag tgaatttgta atatacaacg tttgtatact
     3841 gaactgccaa aaatgttttc atcatactat caatatattg ttaaagttat tgcttttata
     3901 taataca
//
