LOCUS       XM_056984973            5459 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus HMG-box containing 3 (Hmgxb3),
            transcript variant X1, mRNA.
ACCESSION   XM_056984973
VERSION     XM_056984973.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984973.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5459
                     /gene="Hmgxb3"
                     /note="HMG-box containing 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 21 ESTs, 2 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 57 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361335"
                     /db_xref="RGD:1560009"
     CDS             647..4576
                     /gene="Hmgxb3"
                     /codon_start=1
                     /product="HMG domain-containing protein 3 isoform X1"
                     /protein_id="XP_056840953.1"
                     /db_xref="GeneID:361335"
                     /db_xref="RGD:1560009"
                     /translation="MQLHFGIPKISSLLPVALFQVPAMDAPYDGTEVTVLMEEIEEAY
                     YTSPGPPKKKKKYKIHGEKAKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESW
                     RLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSEYIIIPKSTL
                     QEDRSCPQLELCVAQNQMSPKGSTLMPNASPEVVASHAGMAEQCLAVEALAEEVGALS
                     QPGAMQEIATSEILSHDVLLEEASLEVGESHQPYQTSLVIEETLVNGSSDLPTGSLAV
                     PHSQVGESLSVVTVMRDSSENNPSAPTTQFIMLPLPAYSVVENPSSIKLTTTYTRRGH
                     GTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPAKVKVELASGVSSKGSVIKR
                     NQQSVTTEQNPSKENASKLTLENSEAVSQLLNVAPPREGGEDSEWEEVIVSDAHVLVK
                     EVPGNCNTAVTKMPVVKSGIQAEVSLGTTENDSPGPDIPPSAEGTSTSSLLQAHKKSS
                     GVDLFTTGPKAPELKGRARGKPSLLAAARPMRAILPAPTSVGRGSSMGLPRARQAFPL
                     DKTPPVRTCGLKPSTLKQLGQPIQQPPSTGEVKLSSCASSRTPQLKIVEVKPDMFPPY
                     KYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGFNLAKDRTEKTTKAI
                     EASSPHPDVPSTTEPLNAAQREIQRQSTLQLLRKVMQIPENESELAEVFALIHELNSS
                     RLILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQECWLLTANR
                     LQVVTAQVKMCLNPHCLALHSFMDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRV
                     SVGVVLKSVQEQTEKTLTSEELSQLQDLLCNGYWAFECLTVRDYNDMICGICGVAPKV
                     EMAQRNEENVLALKSVEFTWPEFLGSSEVNVEDFWTTMETEVIEQVAFPASIPITKFD
                     ASVIAPFFPPLMRGAVVVNTEKDKNLDVQPVPGNGSALVRLLQEGTCKLEELGSYGGE
                     ELQFLLEQCDIPFGPEDSRDQLCFSLLALYESVQNGARARPPPTHFTGGKIYKVCPHQ
                     VVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATPVALCADLCYPELTSQMWGKN
                     QGCFSNPTEPVVSVSCPELLDQHYSVDVTEAENSVQHPVTKTATRRIIHANTKPDPSD
                     PSAGHRSLSLCPELAPYASTTDSKLSSIRQRPIAFDNATHYYLYNRLMDFLTSREIVN
                     RQIHDIVQSCQPGEVVIRDTLYRLGVAQIKTETQEDGEEEEVPSVVE"
ORIGIN      
        1 ctcactgtat catcatcatc atctcctaag agaaaaagat gagaccagta ggaaatacac
       61 tcgtctctgt tcagctagta agaattcggg cttgtatcca agtctcctga tttccctttc
      121 tccttttgct cgtccgttac catctctgag gtctgaatga gctgtgtgtg ggctctgtcc
      181 tacctatcgg tgtgttaatg tttgagttca ctgtcacaac tctatctcct ggtgtttgtt
      241 ctatagatct aaagagcagt cgtgtttcct tctcataaaa ttcctccctc taaggattga
      301 gttggtgaaa ttccaattta gttcatggcc ataattagct cttcttgaac aattcaaatt
      361 tttatgcctg tcttttccta gacccccacc aaaaacaaaa aaagaaagaa agaaaagaaa
      421 agctacctgg cactagggac tgtgttggtt tgtcgggtta ctgttcggtt tttggctttg
      481 gtttggtgtt ttcttttgag tcaagttcta atgtcctgtg gtttggcctt gaactcctga
      541 tcctcctgtc tctgctccag gtgctggaat tacaggtata ctcctaccag acacaacagc
      601 aagggtactg ttcagatctg tgctgtctgc actacagccg ctagccatgc agttacactt
      661 cggtataccg aaaattagtt cgcttttgcc agtcgcccta tttcaggttc ctgccatgga
      721 cgcaccgtat gacggcactg aggtaactgt cctgatggag gaaatcgagg aagcttatta
      781 cacttcccct gggccaccta agaagaagaa aaaatataaa atacatggag aaaaggccaa
      841 gaaacccagg tctgcttacc ttctgtacta ctatgacatc tacttgaaag tgcagcagga
      901 gctcccccac ctcccccagt ccgagatcaa taagaagatt agtgagagct ggaggctcct
      961 cagcgtggcg gagagaagtt actacttgga gaaagccaaa ctagagaaag aaggtttgga
     1021 tcctaactct aagctctctg cactgactgc tgtggttccg gacatcccag gtttcagaaa
     1081 gatccttccg cgatcggaat acatcatcat tcccaagagc accctgcagg aagacaggag
     1141 ctgccctcag ctagagctgt gtgtggctca gaaccagatg tcccctaaag gatctactct
     1201 catgcctaat gcttccccag aagtagtagc cagccatgca ggcatggcag agcagtgcct
     1261 ggctgtggag gccctggctg aggaggtagg agccctttcc cagccgggtg ccatgcagga
     1321 gattgccacc tcagagatcc tcagccacga tgtgctcctg gaggaggcgt ccttggaggt
     1381 aggagagagc caccaacctt accagacaag cctggtaatt gaagagactt tagtaaatgg
     1441 ctcatcagac ctccctactg gaagcctggc tgtgccacat tcccaggttg gggagagctt
     1501 gtcagtggta acggtcatga gggactccag tgagaataac ccctctgctc caaccaccca
     1561 gttcatcatg ctgcctctgc ctgcttactc ggttgtggag aacccttcct ccatcaaact
     1621 gactacaaca tacactcgcc ggggccatgg gacatgcacg agcccaggtt gttcttttac
     1681 ctacgtcacc aggcacaaac cacctaagtg ccctacttgt ggtaacttcc taggtgggaa
     1741 gtggatccca aaggaaaagc cagccaaagt caaagtggaa ttggcttcag gtgtctcctc
     1801 caaaggttct gtgattaaaa gaaatcagca gtctgtcacc actgagcaaa acccctctaa
     1861 ggaaaatgct tcaaaattga ctctggaaaa ctcagaagct gtaagccagc tcttaaacgt
     1921 agctcctcca agagaagggg gcgaggacag tgagtgggag gaagtgattg tctccgatgc
     1981 tcatgttttg gtcaaagaag ttcctgggaa ttgcaataca gcagtaacca agatgccagt
     2041 tgtcaagagt ggtatacagg ctgaggtctc gctggggaca actgagaatg acagtcctgg
     2101 accagacata ccaccatcgg ccgaggggac cagcacctcc agtttactcc aagctcacaa
     2161 aaagtcttca ggagttgacc tattcaccac tggacccaaa gccccagagc ttaaaggcag
     2221 agcacgaggc aagccctcct tactggctgc agcgagacct atgagagcaa tactgccagc
     2281 cccaacaagt gttggacggg gcagcagcat gggactgccc agggccaggc aggctttccc
     2341 gctggataag actcctcctg tgaggacttg tggcctgaag ccaagcacgc tgaaacagct
     2401 gggccaaccc atccaacagc cacctagcac tggtgaagta aagctatcca gttgcgcaag
     2461 cagcaggacc cctcagctga aaatcgtgga ggtcaagcct gacatgttcc ctccgtataa
     2521 atacagctgc actgtcacat tggatttggg cctggctaca tcaagaggac ggggaaagtg
     2581 caaaaatccc tcctgtagct acgtctacac caaccggcac aagcctcgga tttgtcccag
     2641 ctgtggtttt aaccttgcca aagacaggac tgagaaaact acaaaggcca ttgaggcgag
     2701 ctctccacac ccagatgtgc caagtaccac agaacccctg aatgcagccc agagggagat
     2761 ccagcgtcag tccacgctgc agctgctgcg taaagtcatg cagattcctg agaacgagtc
     2821 agagctggcc gaggtcttcg ccttgattca tgaactgaac agctctcgac ttatcctgtc
     2881 caacgtgagt gaggagacag tcaccatcga acagacctct tggtcgaatt attatgagtc
     2941 tccatccacg cagtgccttc tctgtagcag cccattgttc aaagggggac aaaactctct
     3001 ggccgggccc caggaatgct ggctcctgac ggctaaccgg ctacaggtgg tgactgcgca
     3061 ggtgaagatg tgtctgaacc ctcattgttt ggccttgcac agcttcatgg acatctacac
     3121 aggtctcttt aacgtgggga ataagttgct ggtcagcctg gacttacttt tcgcaatccg
     3181 gaaccagatt aagctgggag aagaccccag agtgtctgtc ggcgttgtgc tgaagtctgt
     3241 gcaggagcaa acagagaaga cactgacctc agaggagctg agccagctgc aagatctgtt
     3301 gtgcaatggc tattgggctt ttgagtgcct cactgttcgg gactacaatg acatgatctg
     3361 tgggatctgc ggggtggccc ccaaagtgga aatggctcag aggaatgaag agaatgtgct
     3421 ggcactgaag agtgtggagt ttacctggcc tgaattcttg ggctccagtg aggtgaacgt
     3481 agaggacttt tggaccacaa tggagacaga agtgattgag caggttgcct tccctgcgag
     3541 catccccatc accaagtttg atgcctctgt tattgctccc ttcttcccac cgctcatgag
     3601 aggagccgtg gttgtcaaca ctgagaaaga caaaaacctg gatgtgcagc cagtgcctgg
     3661 caatggcagt gccttggtga gactgctgca ggaaggcacc tgcaagcttg aggaacttgg
     3721 ctcctatggg ggggaggagc tacagttcct tctggagcag tgcgacatcc cctttggccc
     3781 agaagactca agggatcagc tctgcttctc cttattggcc ctctatgaat ctgtacagaa
     3841 tggagccaga gctagaccac ccccaactca tttcacaggg ggtaaaatct acaaagtgtg
     3901 cccccatcag gtagtctgtg gttccaagta tcttgttcga ggtgaaagtg cccgtgacca
     3961 tgtggatctg cttgcttctt cccgccactg gccacctgtc tatgtggtag atatggccac
     4021 accagtggcc ctatgtgctg acctctgcta cccagagctg actagccaga tgtgggggaa
     4081 gaatcaaggc tgtttctcta accctacaga gccagttgtg agtgtgtcct gccctgaact
     4141 cttggaccag cattattctg tggatgtgac agaggctgaa aactctgtcc agcatccagt
     4201 cactaagact gccacacgtc gaattatcca tgcaaacaca aagcctgatc ccagtgaccc
     4261 cagtgctggc caccgttcct tatcactgtg ccctgagctg gcaccttatg cctctaccac
     4321 ggacagcaaa ctcagcagta tccgccagcg gcccatcgcc tttgacaatg ccacccacta
     4381 ttacctctac aaccgcctca tggacttcct caccagccga gagattgtca acaggcaaat
     4441 ccatgacatt gtgcagagct gccagcctgg cgaggtggtc attcgtgaca ccctctatcg
     4501 ccttggggtc gctcagatca agacagagac ccaggaggat ggagaggaag aggaagtacc
     4561 ctcagtggtg gaataagcca ggtttttatg tacagggcct gcatcatctc tctcaagcca
     4621 taatatggcc cttgcccaag gcagtccttt gagaggacct gcagtcctct gtagggaggg
     4681 cctctgactg ctggaactga ccaaagagct tccatttcat gagcacagtg gggccctcaa
     4741 cctctaaggc tcaggagagg tgctgggaaa cctctacttg acctgagaga gcacgtgggt
     4801 tggggagcat gatattttta aggatcagat gctgatggaa aggccggggc ctggttgtcc
     4861 agacccacca ccacctgggg tcctgcaccg ggtggggcag ccattgagct aagctggtgg
     4921 ggaggagctt tggctcctgt cctatgagct tcctagcttg ccttttgact aggggccttg
     4981 ccggcttatt cactcttgtg gtccctttgg gcccttcatt ttccctaaag gaggggtgca
     5041 ttctcttttc ctccagctct ccctgttccc ccaccttggg gcagctgagg aggacagtca
     5101 gttacagctc cctccaggct ctcctctgcc ctgggtttgg gggaagagaa tccttcctcc
     5161 tttctctggc cactgctact gtaccctaca tcctctgggt cctcagaccc tcaccacaga
     5221 ggggatgtgg cccgtggttg tgacatagct gacaagcagt aggaaaactc ccttctgtga
     5281 aggggaagca gatagggccg taaacaaaca gcaacacggg ctcaggtgcc catggtttgc
     5341 ttagggccca ggtttggcca agtgctattt aatttattga gagggtggga taggtggctt
     5401 tccctctcgt tcttccccca acaagaataa agtttattaa attatctggt tttgatgaa
//
