LOCUS       NM_001013184            1235 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus high mobility group nucleosome binding domain 1
            (Hmgn1), mRNA.
ACCESSION   NM_001013184 XM_340975
VERSION     NM_001013184.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1235)
  AUTHORS   Kamileri I, Karakasilioti I and Garinis GA.
  TITLE     Nucleotide excision repair: new tricks with old bricks
  JOURNAL   Trends Genet 28 (11), 566-573 (2012)
   PUBMED   22824526
  REMARK    Review article
REFERENCE   2  (bases 1 to 1235)
  AUTHORS   Masaoka A, Gassman NR, Kedar PS, Prasad R, Hou EW, Horton JK,
            Bustin M and Wilson SH.
  TITLE     HMGN1 protein regulates poly(ADP-ribose) polymerase-1 (PARP-1)
            self-PARylation in mouse fibroblasts
  JOURNAL   J Biol Chem 287 (33), 27648-27658 (2012)
   PUBMED   22736760
REFERENCE   3  (bases 1 to 1235)
  AUTHORS   Rochman M, Taher L, Kurahashi T, Cherukuri S, Uversky VN, Landsman
            D, Ovcharenko I and Bustin M.
  TITLE     Effects of HMGN variants on the cellular transcription profile
  JOURNAL   Nucleic Acids Res 39 (10), 4076-4087 (2011)
   PUBMED   21278158
REFERENCE   4  (bases 1 to 1235)
  AUTHORS   Hu YH, Warnatz HJ, Vanhecke D, Wagner F, Fiebitz A, Thamm S, Kahlem
            P, Lehrach H, Yaspo ML and Janitz M.
  TITLE     Cell array-based intracellular localization screening reveals novel
            functional features of human chromosome 21 proteins
  JOURNAL   BMC Genomics 7, 155 (2006)
   PUBMED   16780588
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1235)
  AUTHORS   Birger Y, Davis J, Furusawa T, Rand E, Piatigorsky J and Bustin M.
  TITLE     A role for chromosomal protein HMGN1 in corneal maturation
  JOURNAL   Differentiation 74 (1), 19-29 (2006)
   PUBMED   16466397
REFERENCE   6  (bases 1 to 1235)
  AUTHORS   Birger Y, West KL, Postnikov YV, Lim JH, Furusawa T, Wagner JP,
            Laufer CS, Kraemer KH and Bustin M.
  TITLE     Chromosomal protein HMGN1 enhances the rate of DNA repair in
            chromatin
  JOURNAL   EMBO J 22 (7), 1665-1675 (2003)
   PUBMED   12660172
REFERENCE   7  (bases 1 to 1235)
  AUTHORS   Mohamed OA, Bustin M and Clarke HJ.
  TITLE     High-mobility group proteins 14 and 17 maintain the timing of early
            embryonic development in the mouse
  JOURNAL   Dev Biol 229 (1), 237-249 (2001)
   PUBMED   11133167
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC086423.1.
            
            On Apr 20, 2005 this sequence version replaced XM_340975.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ222121.1, CF111027.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132302, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1235
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..1235
                     /gene="Hmgn1"
                     /note="high mobility group nucleosome binding domain 1"
                     /db_xref="GeneID:360704"
                     /db_xref="RGD:1307761"
     exon            1..94
                     /gene="Hmgn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..370
                     /gene="Hmgn1"
                     /note="non-histone chromosomal protein HMG-14-like"
                     /codon_start=1
                     /product="non-histone chromosomal protein HMG-14"
                     /protein_id="NP_001013202.1"
                     /db_xref="GeneID:360704"
                     /db_xref="RGD:1307761"
                     /translation="MPKRKVSADGAAKAEPKRRSARLSAKPAPAKVDAKPKKAAGKDK
                     ASDKKAQIKGKRGAKGKQAEVADQQTTDLPAENGETENQSPASEEEKEAKSD"
     exon            95..124
                     /gene="Hmgn1"
                     /inference="alignment:Splign:2.1.0"
     exon            125..154
                     /gene="Hmgn1"
                     /inference="alignment:Splign:2.1.0"
     exon            155..205
                     /gene="Hmgn1"
                     /inference="alignment:Splign:2.1.0"
     exon            206..328
                     /gene="Hmgn1"
                     /inference="alignment:Splign:2.1.0"
     exon            329..1182
                     /gene="Hmgn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcgtgtgg tggcggctag gcagtgcagc tccgtgacag atccaacgtc gcacttgtct
       61 cccacccggc gccgccacga tgcccaagag gaaggttagc gcagatggag cggcgaaggc
      121 ggagcccaag cgccgctccg cgaggctgtc ggccaagccc gcccctgcca aggtggacgc
      181 gaaaccgaaa aaggccgcgg gaaaggataa agcatcagac aaaaaagcac agataaaagg
      241 gaagagggga gcgaagggca aacaggctga agtggctgac cagcaaacta cagatctgcc
      301 tgcagaaaat ggagagacgg aaaaccagag tccagcctct gaggaagaga aagaagcgaa
      361 gtctgattaa gcatccatca cgtctgtcag tggtccctgc ctcccttctt gtacaatcca
      421 gaggaatatt tttatcaact attttgtaaa tgcaagtttt ttagtagctc tagaaacatt
      481 tttaaaaggt gagggaatcc cacctcatcc cattttttaa gtgtaaatgg tttttttaag
      541 aggttaaatc atttgctggt tgtttatttt ttggtacaac cagaaaatag caggatactg
      601 aatcaggaga ggctgtgact gtctcggggg tcaccataac attccgtaga gggggctagt
      661 tttatatcct acagtacaaa gcatactaaa tggcaatttg gggtctcagt catgcattcg
      721 tgtctggaat attttcagtt atatctggtc ccgtgtttct agtagaacca ttttgtaaga
      781 aagccagtct ttggtcctcg ccctgtcaga actgtgatgt ctgtggtcat ggcagtccat
      841 tttcctaaca gttgtgataa tgtgctgtga aagatggtga ttttgagtat gttctgtgtg
      901 tgacataaaa ttgtgaattg gtggaactga gcattgtgag cattcggttg ttatgagagg
      961 tcgtaaggaa actggccaag tttgaggctg gagcatcact ggaataagtt cacagaaaaa
     1021 caatatgtag ctcttcgttt gggtacgtga acactattaa ggctcttcag aattagggta
     1081 catgaacact acggctcttc agagtttggg tacgtgtgtt aagaattgga atgtctgtgt
     1141 actctactcc tcgaccaata aaatctcagt tgtgaaagag taaaaaaaaa aaaaaaaaaa
     1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
