LOCUS       XM_017601532            1636 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group AT-hook 1 (Hmga1),
            transcript variant X8, mRNA.
ACCESSION   XM_017601532
VERSION     XM_017601532.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017601532.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1636
                     /gene="Hmga1"
                     /gene_synonym="Hmgi; Hmgiy"
                     /note="high mobility group AT-hook 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 45 ESTs, 13 long SRA reads, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 200 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:117062"
                     /db_xref="RGD:628699"
     CDS             171..461
                     /gene="Hmga1"
                     /gene_synonym="Hmgi; Hmgiy"
                     /codon_start=1
                     /product="high mobility group protein HMG-I/HMG-Y isoform
                     X2"
                     /protein_id="XP_017457021.1"
                     /db_xref="GeneID:117062"
                     /db_xref="RGD:628699"
                     /translation="MSESVSKSSQPLASKQEKDGTEKRGRGRPRKQPSKEPSEVPTPK
                     RPRGRPKGSKNKGTAKTRKVTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ"
ORIGIN      
        1 tggcgcgggc gggcccgtcc ctcccgcccc tgggtcgctc tttttaagct cccctgagcc
       61 ggggctgcgc tcctctaatt gggactccga gtcgcggcta tttctggtgt tggcgcggct
      121 ccaagaagag ccagactcac tctgtgctgc cccacacata gagaagcaga atgagcgagt
      181 cggtctcaaa gtccagccag cccctggcct ccaagcagga aaaggatggg actgagaagc
      241 gaggccgggg caggccgcgc aagcagcctt cgaaggagcc cagtgaagtg ccaaccccga
      301 agagaccccg gggccggccg aagggaagca agaacaaggg cacagccaag acgcggaaag
      361 ttaccacaac tccggggagg aaaccaaggg gcagacccaa gaaactggag aaggaggaag
      421 aggagggcat ctcccaggag tcctcggagg aggagcagtg accacttgca gtgccgcctg
      481 ctccttggcc actgaggagc ggccttcccc tgggactgga agccctgctc ccaggccccg
      541 ccccgccccc actgcacact accgcaccag gcaccagctg caggctctgc ggcacccacg
      601 ggagcaggat ttggctcagt ccctgtgccc tcctccccaa cacacctgcc ccctcctgac
      661 aaggttaact tcccatcaag ccgcagccca gcctgctgcg tgcctccctc agagccctcg
      721 ctcttagctc tccgggcgct ttgtttcgca ggtccctcct gccctgctgc tcctggcttc
      781 cctgtagagg gtccttggag cattccctgg ccttaagggg ccacagcccc atctcattcc
      841 gacaagcccc gatggctgac ctggcggcag cagtgtggtc agtgcagggg aagcttaggt
      901 cccagcatgt atgtccccca tcaagcgtca ccgggtgggt ttctcagtcc ctcctgcccc
      961 accctactga gaatcctgca ccaggttggc tgagcccctt ggctggacaa caggaagtag
     1021 gatggtgttg gctccaccca ctttgctgct cttccctggg acaagacaga tgggcgctac
     1081 cacccatctc gagtgaggtc ctgagcactt ccacctaagg cagacggggc tccaacaggc
     1141 gcctccccca ctacactctt cctctagcag ggcaccaagg agctcgcctt gccccccctc
     1201 tccttttgct cctccctgcc ccccaaggtt ctggttccac cttttcctct gttcacaaac
     1261 tacctctgga cagttgtgtt gtgttttttg ttcaatgttc attcttagac acccaccatt
     1321 gctgctacca gcgccagatg tccatcctcc cgattttgcc tgtacccccc acacaataca
     1381 ctctagggga agggggggct ggtgtgcagc agcaggctgg ttaccgagta ccccacgcta
     1441 gggaagatgg ggcccccgcc ccgtggatgc tgcagcagag tgaggagggg gggcccactt
     1501 ggatgggaaa agggtatagg accacctccc cttgttgtgg gggaggggtg gccagtattt
     1561 gtcccagcct ggggctcccc ctctggtttc ctatttgcag ttacttgaat aaaaaaaaaa
     1621 tagccttttc tggaca
//
