LOCUS       XM_006256163            2192 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group AT-hook 1 (Hmga1),
            transcript variant X7, mRNA.
ACCESSION   XM_006256163
VERSION     XM_006256163.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006256163.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006256163.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2192
                     /gene="Hmga1"
                     /gene_synonym="Hmgi; Hmgiy"
                     /note="high mobility group AT-hook 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 44 ESTs, 11 long SRA reads, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:117062"
                     /db_xref="RGD:628699"
     CDS             727..1017
                     /gene="Hmga1"
                     /gene_synonym="Hmgi; Hmgiy"
                     /codon_start=1
                     /product="high mobility group protein HMG-I/HMG-Y isoform
                     X2"
                     /protein_id="XP_006256225.1"
                     /db_xref="GeneID:117062"
                     /db_xref="RGD:628699"
                     /translation="MSESVSKSSQPLASKQEKDGTEKRGRGRPRKQPSKEPSEVPTPK
                     RPRGRPKGSKNKGTAKTRKVTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ"
ORIGIN      
        1 gcacccggcg gcgcccgtgc acctagcgct cggcgagccc ggcctcgggg aggggcgcgc
       61 gctgcacagc ggcgggaggt gggcgcgcgc cccccttagc cagggaagtt ctagaagtga
      121 gggggagggg cccggcgccc cgagattcct ctctggcctc tcctcggcct ttcccagggt
      181 agtgctgtgc gtagaagagg ccggatcgcg agggcctggg ttttggggct tcacccacac
      241 acacaccttt ggccctgccc cgcgcctctt cagcccccag ggccgggcct gccctccgcc
      301 cccacaaact ggttcctctg ctttgctggg ttctgttaga actagtccct tggactcccc
      361 gtttctgccc tcccccaccc ccgttttcag ggagggagga gggggatttt cttcctgcga
      421 ctcgcaccag gtttcctgcc cccaaggcgg gctttgggtg ccccctctgg caggaagtgg
      481 ggccgggcgc acccgcgtgg cggtgcatgt ggtcggggtg cgccgtttcc cgcgcctgca
      541 gggcctgcgc ccctccccct cgtcctagct cctagaagcg ccggcctaca accgccaggc
      601 cgggacgctg gcgaaggcac cctcactccg gagtagaggg cgccagggtc ttaacctgct
      661 tctcagtaaa caaagtggcg gtctagccag actcactctg tgctgcccca cacatagaga
      721 agcagaatga gcgagtcggt ctcaaagtcc agccagcccc tggcctccaa gcaggaaaag
      781 gatgggactg agaagcgagg ccggggcagg ccgcgcaagc agccttcgaa ggagcccagt
      841 gaagtgccaa ccccgaagag accccggggc cggccgaagg gaagcaagaa caagggcaca
      901 gccaagacgc ggaaagttac cacaactccg gggaggaaac caaggggcag acccaagaaa
      961 ctggagaagg aggaagagga gggcatctcc caggagtcct cggaggagga gcagtgacca
     1021 cttgcagtgc cgcctgctcc ttggccactg aggagcggcc ttcccctggg actggaagcc
     1081 ctgctcccag gccccgcccc gcccccactg cacactaccg caccaggcac cagctgcagg
     1141 ctctgcggca cccacgggag caggatttgg ctcagtccct gtgccctcct ccccaacaca
     1201 cctgccccct cctgacaagg ttaacttccc atcaagccgc agcccagcct gctgcgtgcc
     1261 tccctcagag ccctcgctct tagctctccg ggcgctttgt ttcgcaggtc cctcctgccc
     1321 tgctgctcct ggcttccctg tagagggtcc ttggagcatt ccctggcctt aaggggccac
     1381 agccccatct cattccgaca agccccgatg gctgacctgg cggcagcagt gtggtcagtg
     1441 caggggaagc ttaggtccca gcatgtatgt cccccatcaa gcgtcaccgg gtgggtttct
     1501 cagtccctcc tgccccaccc tactgagaat cctgcaccag gttggctgag ccccttggct
     1561 ggacaacagg aagtaggatg gtgttggctc cacccacttt gctgctcttc cctgggacaa
     1621 gacagatggg cgctaccacc catctcgagt gaggtcctga gcacttccac ctaaggcaga
     1681 cggggctcca acaggcgcct cccccactac actcttcctc tagcagggca ccaaggagct
     1741 cgccttgccc cccctctcct tttgctcctc cctgcccccc aaggttctgg ttccaccttt
     1801 tcctctgttc acaaactacc tctggacagt tgtgttgtgt tttttgttca atgttcattc
     1861 ttagacaccc accattgctg ctaccagcgc cagatgtcca tcctcccgat tttgcctgta
     1921 ccccccacac aatacactct aggggaaggg ggggctggtg tgcagcagca ggctggttac
     1981 cgagtacccc acgctaggga agatggggcc cccgccccgt ggatgctgca gcagagtgag
     2041 gagggggggc ccacttggat gggaaaaggg tataggacca cctccccttg ttgtggggga
     2101 ggggtggcca gtatttgtcc cagcctgggg ctccccctct ggtttcctat ttgcagttac
     2161 ttgaataaaa aaaaaatagc cttttctgga ca
//
