LOCUS       NM_001108731            1676 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus high mobility group 20 B (Hmg20b), mRNA.
ACCESSION   NM_001108731 XM_001075699 XM_343153
VERSION     NM_001108731.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ceballos-Chavez M, Rivero S, Garcia-Gutierrez P, Rodriguez-Paredes
            M, Garcia-Dominguez M, Bhattacharya S and Reyes JC.
  TITLE     Control of neuronal differentiation by sumoylation of BRAF35, a
            subunit of the LSD1-CoREST histone demethylase complex
  JOURNAL   Proc Natl Acad Sci U S A 109 (21), 8085-8090 (2012)
   PUBMED   22570500
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Rajan S, Chu Pham Dang H, Djambazian H, Zuzan H, Fedyshyn Y, Ketela
            T, Moffat J, Hudson TJ and Sladek R.
  TITLE     Analysis of early C2C12 myogenesis identifies stably and
            differentially expressed transcriptional regulators whose
            knock-down inhibits myoblast differentiation
  JOURNAL   Physiol Genomics 44 (2), 183-197 (2012)
   PUBMED   22147266
REFERENCE   3  (bases 1 to 1676)
  AUTHORS   Artegiani B, Labbaye C, Sferra A, Quaranta MT, Torreri P, Macchia
            G, Ceccarini M, Petrucci TC and Macioce P.
  TITLE     The interaction with HMG20a/b proteins suggests a potential role
            for beta-dystrobrevin in neuronal differentiation
  JOURNAL   J Biol Chem 285 (32), 24740-24750 (2010)
   PUBMED   20530487
  REMARK    GeneRIF: beta-dystrobrevin interacts with the HMG20 proteins iBRAF
            and BRAF35
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474029.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343153.3, XM_001075699.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..1676
                     /gene="Hmg20b"
                     /note="high mobility group 20 B"
                     /db_xref="GeneID:362825"
                     /db_xref="RGD:1309235"
     exon            1..343
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     CDS             306..1262
                     /gene="Hmg20b"
                     /codon_start=1
                     /product="SWI/SNF-related matrix-associated
                     actin-dependent regulator of chromatin subfamily E member
                     1-related"
                     /protein_id="NP_001102201.1"
                     /db_xref="GeneID:362825"
                     /db_xref="RGD:1309235"
                     /translation="MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGPRAGEKG
                     PQEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK
                     MLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDS
                     SSGLMNTLLNGHKGVDCGDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQN
                     AVLQRHTQSMNSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETP
                     TLGTLDFYMARLHGAIERDPAQHERLIARVKEILARVASEHL"
     exon            344..452
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            453..656
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            657..777
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            778..824
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            825..900
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            901..1116
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1249
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
     exon            1250..1676
                     /gene="Hmg20b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggaggagcg ggcgcgggcg cttggttgga gcgtcgccgc atcccaggtc ccgggaaagt
       61 tttttcagag gtgaaaagag ccgggaagtc ggggcctgcg cggggcggag gctgcggggc
      121 gcggcctccg ggactcgatc tcgcaacaaa ggatcgcggg gcctcccgcc ccaggaccta
      181 cccgccccgg gatcagcctc ccccgcttgg gcaccccggg gaccggcctg cggtcccgtc
      241 ggggtggcag gcaggaaccc cctaaccttt gccggcttct gttccaggac ccccccggag
      301 tggccatgtc ccacggtccc cggcagccag gcgcagccac cgcacctgcg ggaggcaaga
      361 ctccgggcca gcatggggcc tttgtagtgg ctgtcaagca ggagcgcagc gaaggtcccc
      421 gtgccggaga gaaggggccc caggaggagg agccagtgaa gaagcgaggc tggcccaaag
      481 gcaagaaaag aaagaagatt ctccccaatg ggcccaaggc cccggtcacg ggctatgttc
      541 gcttcctgaa cgagaggcgg gagcagattc gcacccgaca tccggacctt cccttcccgg
      601 agatcaccaa gatgttgggc gcggagtgga gcaagctgca gccagcagag aagcagcggt
      661 acctggatga ggcagagaag gagaaacagc agtacttgaa ggagctgtgg gcataccagc
      721 agtcagaggc ctacaaggtc tgcaccgaga agatccaaga aaacaaaata aaaaaagagg
      781 actccagctc tgggctcatg aacaccctcc tgaatggaca caagggtgtg gactgcggcg
      841 atggcttttc aacctttgat gttcccatct tcactgaaga gtttttggac caaaacaaag
      901 cacgcgaggc agagctgcgg cgcctgcgga agatgaacgt ggctttcgag gagcagaacg
      961 cagtgctgca gcgccacact cagagcatga acagcgctcg tgagcgtctg gagcaagagc
     1021 tggcgctgga ggagcggcgc acgctggcgc tgcaacagca actgcaggct gtgagacaag
     1081 cgctcacggc tagtttcgcc tctctgccgg tgcccggcac cggggagacg ccgacgctcg
     1141 gaacgctgga cttctacatg gcgcggcttc acggagccat cgagcgcgac ccggcgcagc
     1201 acgagagact gatcgcgcgc gtcaaggaga tcctggcgcg agtagccagc gagcacctgt
     1261 gacaggcctc ttggaccggg agacgcccct ccacacccgc ccaggaagaa gctgcacctt
     1321 ggggtctcca gacccccctc aaatgaaatc tcaactgcat ccctttaacc tcgaacccca
     1381 acccaggttg cagagcccgg aagacctgcc tgcctcacag ggagggtcac agtacagtgg
     1441 gtcaggaaca gaggaaccat ggcctccgga ctcagatacc ccaccgccac ccctgatgaa
     1501 gagcaggacc ctaggccact caccatacag ccactggacc cactgggcag gcgctaacca
     1561 agcagcgccg gggtaggggt ggggtagtcc aacagcccct taccccacgc ctttcatcac
     1621 tcaatccgga cttttaaata tgtgtcaata aaagcaagtg agttttcatt caagtt
//
