LOCUS       NM_001108150            3638 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus high mobility group 20A (Hmg20a), mRNA.
ACCESSION   NM_001108150 XM_001073808 XM_236267
VERSION     NM_001108150.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3638)
  AUTHORS   Ceballos-Chavez M, Rivero S, Garcia-Gutierrez P, Rodriguez-Paredes
            M, Garcia-Dominguez M, Bhattacharya S and Reyes JC.
  TITLE     Control of neuronal differentiation by sumoylation of BRAF35, a
            subunit of the LSD1-CoREST histone demethylase complex
  JOURNAL   Proc Natl Acad Sci U S A 109 (21), 8085-8090 (2012)
   PUBMED   22570500
REFERENCE   2  (bases 1 to 3638)
  AUTHORS   Artegiani B, Labbaye C, Sferra A, Quaranta MT, Torreri P, Macchia
            G, Ceccarini M, Petrucci TC and Macioce P.
  TITLE     The interaction with HMG20a/b proteins suggests a potential role
            for beta-dystrobrevin in neuronal differentiation
  JOURNAL   J Biol Chem 285 (32), 24740-24750 (2010)
   PUBMED   20530487
  REMARK    GeneRIF: beta-dystrobrevin interacts with the HMG20 proteins iBRAF
            and BRAF35
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473975.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_236267.3, XM_001073808.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..3638
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /note="high mobility group 20A"
                     /db_xref="GeneID:315689"
                     /db_xref="RGD:1564760"
     exon            1..271
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            272..364
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     CDS             276..1319
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /codon_start=1
                     /product="high mobility group protein 20A"
                     /protein_id="NP_001101620.1"
                     /db_xref="GeneID:315689"
                     /db_xref="RGD:1564760"
                     /translation="MESLMSSSTLPPLSADEDGSKESNGLAVTGLTHPEGPYGSAATS
                     TTNNPEFVEDLSQGQLLQSESSNAAEGSEQRPEDEQRSKRGGWSKGRKRKKPLRDSNA
                     PKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK
                     ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDI
                     PIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERS
                     RNTVLQQHLETLRQMLTSSFASMPLPGSGEIPTVDTIDSYMNRLHSIILANPQDNENF
                     IATVREVVNRLDR"
     exon            365..512
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            513..725
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            726..858
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            859..890
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            891..966
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1182
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1325
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
     exon            1326..3638
                     /gene="Hmg20a"
                     /gene_synonym="RGD1564760"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaagtatcg ggtataacat ttcacgtctc tcctcatcgg aacaattctc aatattacca
       61 cgataaaaga agttacctat ctggaggtga ctaaatgatt aagtaaagag taagaaaaga
      121 catcaaaata aagtactgcg gaggaatttc tgtcaagctg tgagacgacg gagtgaagag
      181 tgaaggcgat tgcgaggggc tgagggaatt gtcctctgtg caagggactt tcattagtcc
      241 ccaggcccct gcctgcccct accgtcagca gggagatgga aagcttgatg tccagttcta
      301 ccctgccgcc cctttctgca gatgaagacg gctccaagga gagtaacggt ctggctgtaa
      361 ctgggttaac acaccccgag ggtccatatg gcagtgcagc cacatcaaca accaacaacc
      421 cagaatttgt ggaggatctc tcccaaggcc agctgcttca gagtgagtct tccaatgctg
      481 cagaaggcag tgagcagagg cctgaagatg agcaaagaag taaacgagga ggctggtcca
      541 aagggagaaa aaggaagaaa cctcttcggg acagcaatgc acccaagtcc ccccttacag
      601 gatatgttcg attcatgaat gagcgtagag aacagcttcg agcaaaacga ccagaggtcc
      661 catttccaga aatcacaagg atgttgggca acgagtggag taaactgcct cctgaggaaa
      721 aacagcgcta ccttgatgaa gcagacagag ataaggagcg ttacatgaag gaactggagc
      781 agtatcaaaa gaccgaagcc tacaaggtct tcagtaggaa aacgcaagac cgtcagaaag
      841 gcaaatctca tcggcaagat gcagcccggc aggccactca tgatcatgag aaagaaacag
      901 aagtaaagga acgctctgtt tttgacatcc ctatatttac cgaagagttc ctaaaccaca
      961 gcaaagctcg tgaggcagaa cttcgccagc ttcgtaaatc caacatggag tttgaagaaa
     1021 ggaacgcagc cctacagaag catgtggaaa gcatgcgcac agcagtggag aagctggagg
     1081 ttgatgtgat ccaggaacgg agccgaaaca ccgtccttca gcagcacctg gaaaccctgc
     1141 ggcagatgtt gaccagcagc tttgccagca tgcctttgcc tggaagtgga gaaataccaa
     1201 cagtggacac cattgactca tacatgaaca gattgcacag tataatttta gctaatcccc
     1261 aagacaacga aaacttcata gctacagtcc gagaggttgt gaacaggctt gatcgctaag
     1321 cactgatctt agtgctccaa gatgtagtgt atacacttgc acagaacgag aagccgccca
     1381 ttgacatttg aactgagaca gggcagagga ctgcagatcc cccctgtgaa agaattgtca
     1441 gtaagtgaaa tgctttcatc ccaggaagct gcgtgagggg gcaacagagc cgatatgtga
     1501 actctgtagg aataccctgt gtgaagcttt gaacgtgtac agcccctctg ctgaagtgat
     1561 ctgcacacat tctcttgaca acatcgaccc aagactgaca tcttccttct ctccgcagca
     1621 gaaagggagc tttctcattg ttacaatccc actccagttt tcttacccag atgtcacttt
     1681 tttaaatgcc tctgggggac tgctttcctt cactcctacc aagatacaca tctccatttt
     1741 ctgacctctg ggttttgttg ctcagcgggg ctttgaagga gaattctcat tggatggacc
     1801 caatcttctc catcactgcc ctgctgtgac tccaaagaag ggagcttctt gttgacagtg
     1861 ccctgtggag ccaggcagtg tttcctgccc tccatggtgc tcagtgggtg ccagcccctc
     1921 agcaggctct ctgactgctg ccctaaagga cagtgctccc tcctgccttc ctggtcctgc
     1981 ctgctgatct ctgagcactg ctcctgctca gactgggaat cccagccaca gcaaggttct
     2041 tcagtcccca tctgttggca gtatcttgtg gagtactttt gctgaggaaa aggtcattgg
     2101 taaagagcgg ggaggagagt gatggagccc acatctgact aagaggaaac agcagcacgg
     2161 ttcagtgcac agatccatgc attgagatga tgggaacgtc tttggaagaa gtttcatgag
     2221 ctcacaagaa ggcacagtgg aatccacttg tgtttgcttt cctctgtagc cactaactgc
     2281 cgaatctgtg gaatctatga ggaaaaggca gcttccttcc ctccctctcc ttactatgga
     2341 attttcttgt tgtttaatca caaaaacaaa caggttctgt ttctctcctc agggtcggtt
     2401 ttcagttttt gggttgggtt tgggttttgg gttgggtttg gggttggggt tgggtttggg
     2461 gtttggtttg gttgtaagtt tggggtttgg tttggttttt tgttttcctt ttatgctcta
     2521 gagaacaagg atagaggtgg cagctgagat ctttggaacc aaagcagagc atgctgagtc
     2581 catgatctag gcactggcca ccaaaggcag ggccctcaca tatgcccata agccagagcc
     2641 cccatgctgt ggccacatca ccctgtcttc tccgtactgc atcctcttct acgtgcttta
     2701 ttagctagtc caaagggggc agcagtagta atgagagctg tgtgagcaca tggaactcca
     2761 tgcactgaaa cccacatacc actcatttag aaaaagacct cgtaggcact gcacaaccag
     2821 ccagctctgc tgcctgtgtc tgcccggctc cctcctcctt agattgcttg cctgctaaac
     2881 ccatgctaga actcactgtc tggcagaagg atacccaagc ctgttctggg attttgtctg
     2941 tcttcagcca gatgcttcct gcccttcctt ccttcctcct catattgctg tttctctctg
     3001 tgtgcagttc tgcgccattt ccatagcact gatcttaaca cccagataaa gctatggctt
     3061 ggtccaaaga tcatctttct cctctttaca gatgtgatac ctcatctcat ctacacacat
     3121 ttgcatagcc agaatttagg aggatggcaa gagaatctac aggatggaat ccttgtcaca
     3181 gcaacagctt cctttcaaat actgcctcgc ccagcagctc aacacttgcc ttaagtggct
     3241 gggattcagt caggttatgc agggctgttt tgttccacct tgtcgcaccc catgctcaac
     3301 ataggggagg agttaagggt gcaggctggc ccgagggttt attccctgaa ggttcatggc
     3361 tgatcctgca cctacgtgtt ctcaagaagg aagcagttac caagtcagtg ttacacattc
     3421 cactcttgct ttttattaaa acacaggagc agctggggaa gggagatgag gggctttata
     3481 tctgacaagt tttagaaaaa gaaatattgt gtacatgtgt ttggagctgt tgaattgcca
     3541 ggtttctgta caagcgtttt gtaattaaac ttttggattt tctttaagaa gttgatgtgc
     3601 ttgcttgaca tttgtctcat taaaactttt ctgtgttg
//
