LOCUS       XM_039108165             902 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 5-hydroxymethylcytosine binding, ES
            cell specific (Hmces), transcript variant X2, mRNA.
ACCESSION   XM_039108165
VERSION     XM_039108165.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108165.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..902
                     /gene="Hmces"
                     /note="5-hydroxymethylcytosine binding, ES cell specific;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 62 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:500251"
                     /db_xref="RGD:1559800"
     CDS             136..801
                     /gene="Hmces"
                     /codon_start=1
                     /product="abasic site processing protein HMCES isoform X2"
                     /protein_id="XP_038964093.1"
                     /db_xref="GeneID:500251"
                     /db_xref="RGD:1559800"
                     /translation="MCGRTSCHLPRDALTRACAYLDRQGRRQLPQWRDPDKYCPSYNK
                     SPQSSSPVLLSRLHFEKDADSSDRIIFPMRWGLVPSWFKESDPSKLQFNTSNCRSDTI
                     MEKQSFKAPLGKGRRCVVLADGFYEWQRCQGTNQRQPYFIYFPQSKTEKSGENSGSDS
                     LNNKEEVWDNWRLLTMAGIFDCWEPPKGERLYSYSIITVDSCRGLSDIHSRSPRQVAV
                     VKG"
ORIGIN      
        1 ggaaacccca tggcgtcacg tcacgtcggg ggcggggcgg gattaccgaa gggcggggct
       61 agtgctcttt aggtcgacgc ttgagcgcgg agagtggact ggactatctg gtggtctgag
      121 aggcattgct gaagtatgtg cgggcgaacg tcctgtcact tgcctagaga tgctctcact
      181 agagcctgtg cctatctgga tcggcagggc aggcgtcagc tcccgcagtg gagggaccct
      241 gataagtact gcccctccta caacaagagc ccgcagtcta gcagcccagt gcttctctcc
      301 agactgcact ttgaaaagga tgcagattca tcagatcgga taatttttcc catgcgatgg
      361 ggcttagtcc catcttggtt caaagaaagt gatccttcca agctgcagtt caacacttcc
      421 aactgccgta gtgataccat aatggagaag cagtcgttca aggctcctct ggggaaagga
      481 cggcggtgtg ttgtcttagc agatggattc tacgagtggc agcgatgtca gggaacaaac
      541 cagaggcagc cgtacttcat ctattttcct caaagcaaaa cagagaagtc aggtgagaac
      601 agtggttcag acagccttaa caacaaggaa gaggtctggg acaactggag gctgctgaca
      661 atggcaggga tctttgactg ttgggaaccc ccaaagggag agcgcctgta ttcctacagc
      721 atcatcactg tggattcctg cagaggtctg agtgacatcc acagcaggag cccaaggcaa
      781 gtggcagtag tcaaaggatg atgcaatggc tggctacaaa gtcacccaaa aaggaagtcc
      841 ctgactcacc caaaaaggat gcatcaggtc taccccagtg gtccagccag tttctacaga
      901 ag
//
