LOCUS       XM_006232177            4975 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus helicase-like transcription factor
            (Hltf), transcript variant X3, mRNA.
ACCESSION   XM_006232177
VERSION     XM_006232177.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006232177.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4975
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4975
                     /gene="Hltf"
                     /gene_synonym="Smarca3; Snf2l3"
                     /note="helicase-like transcription factor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 299 long SRA reads, 1 Protein"
                     /db_xref="GeneID:295568"
                     /db_xref="RGD:1309031"
     CDS             166..3135
                     /gene="Hltf"
                     /gene_synonym="Smarca3; Snf2l3"
                     /codon_start=1
                     /product="helicase-like transcription factor isoform X3"
                     /protein_id="XP_006232239.1"
                     /db_xref="GeneID:295568"
                     /db_xref="RGD:1309031"
                     /translation="MSWKFKRDSVWKYSQSAQYGAHENIPRLSYPPFFPRFEFQDIIP
                     PDDFQTSDEELDLVLFGTMRGQVVGIRYYTGVVNNNEMVALEREPNNPYDKNAIKVNN
                     VNGNQVGHLKRDLAAALAYIMDNKLAQVEGVVPFGASNTFTMPLHMTFWGKEENREVV
                     LDHLKKHGFKLGPTPKTVGSSLENTWGSGRAGPSYSRPVHVAVQMTTEQLKTEFDKLF
                     EDLKEDDRTIEMEPAEAVETPLLPHQKQALAWMIARENSKELPPFWELRNDLYYNTIT
                     NFSVKERPENVHGGILADDMGLGKTLTAIAVILTNFDDGRPLLGKRGKESHPGKEYKD
                     ETVKLRGSNTNKTTDGHSEPSACSEEPSISDVSEKSNVSDLFSFFSKRRKISVQSTES
                     SESEEIETSKLSQKMKGKLKNTQLDTKSKVKGTSVMESSKKCDTGERTRTTLIICPLS
                     VLSNWILFSLISLRFFMKYTQDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIIL
                     TTYNILTHDYGTKDNSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTG
                     TPIQNSLKDLWSLLSFLKLKPFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRR
                     TKTSKIKGKPVLELPERKVFIQHITLSVEERKIYQSVKNEGKATIARYFTEGTVLAHY
                     ADVLGLLLRLRQICCHVHLPTNGTSSSDPSRSDTPEELRKMLVTKMKLILSSGSDEEC
                     SICLDSLTFPVITHCAHVFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPEELA
                     CDSDNKSDMEWTSSSKINALMNALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGF
                     VFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAW
                     NPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNMKRELAAGAFGTKKTDA
                     DEMKQAKINEIRTLIDL"
     polyA_site      4975
                     /gene="Hltf"
                     /gene_synonym="Smarca3; Snf2l3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gttgcaggaa ggagtgggcg tagacatgtc tcccggggag cttgtggcct ccagattctg
       61 acttgctttc cggcccctgg gccgctacac cttgaggagc tttttcagac ggtctgagaa
      121 gatccggggt gcccagggca ttccaaagcc actccgcccc ccgccatgtc ttggaagttc
      181 aagagggatt ctgtttggaa gtattcacag tctgcccagt atggagccca tgaaaatatt
      241 ccaagacttt catacccacc tttctttcca cgttttgaat tccaagacat tatccctcca
      301 gatgacttcc aaactagtga tgaagagcta gatttggttt tatttggaac tatgagagga
      361 caagttgttg gaatacgcta ttacacagga gttgtgaata acaatgaaat ggttgcttta
      421 gaacgagagc ctaataaccc gtatgataag aatgctatta aagtaaataa tgtgaatgga
      481 aatcaggttg gccatctaaa gagagatctt gcagctgcct tggcctatat catggacaac
      541 aaattggccc aagtggaagg ggtagttcct tttggtgcaa gtaatacttt taccatgcct
      601 cttcatatga ctttctgggg aaaagaagaa aatagagagg tggttttaga tcatttgaag
      661 aaacatggat ttaagttggg tcccacacca aaaactgtag gatcgagttt ggagaataca
      721 tggggctctg gaagagctgg accaagctat agtaggccgg ttcatgttgc tgtacagatg
      781 acaactgaac agctcaaaac ggaatttgac aaattatttg aagatttaaa agaagacgat
      841 agaactattg aaatggagcc agctgaggct gttgaaacac cattgctccc acaccaaaaa
      901 caagctctag cttggatgat tgcacgagag aacagcaaag aacttccacc cttctgggaa
      961 ctgcgaaatg acctgtatta taatacaata acaaattttt ctgtgaagga acgaccagaa
     1021 aatgttcatg gaggaatttt agctgatgat atgggtttgg gcaaaactct tactgctatt
     1081 gctgtaattc ttaccaactt tgatgatggc aggccgcttc ttggtaaaag aggcaaggag
     1141 agtcacccag gaaaggaata caaggacgag accgttaaac tcagaggaag taatacgaac
     1201 aagacgacag atggacactc agagccatca gcatgtagtg aagaacccag tatttcagat
     1261 gtttcggaga agagtaatgt gtcagatttg tttagtttct tctctaaaag aagaaaaatt
     1321 tctgtacagt ccactgaaag cagtgaatca gaggaaattg aaacaagtaa actgtcccag
     1381 aaaatgaaag gcaagctgaa aaatacacag ttagatacta aaagtaaagt aaaaggtaca
     1441 tctgtgatgg agagctcaaa gaagtgtgac actggagaga ggacaagaac aacactgatc
     1501 atctgtccac tctctgtgct gagcaattgg attttattca gtctgatatc actgcgtttc
     1561 ttcatgaaat atactcagga ccagattgga caacatataa aatcagaagt ggacttgaat
     1621 ctttatgttt attatggtcc tgatcgtatt agagattcaa cctggctttc aaaacaggat
     1681 attattttga ctacttataa tattttaact catgattatg gaactaaaga taatagtcca
     1741 ttacacagca taaagtggtt aagagtgatc ctggatgaag gccatgccat acgaaatcca
     1801 aatgctcaac agacaaaagc tgttcttgag ttagaggcag aaagaagatg ggtattgaca
     1861 ggtactccta tccagaattc tttgaaggac ttgtggtctc ttctgtcctt tttaaaactg
     1921 aaaccattta ctgatagaga atggtggcat agaataatac agcgtcctgt cacaacagga
     1981 gatgagggag gacttaggcg tttacagtcc ttaattaaaa gcatcacact tagaagaaca
     2041 aagacaagca aaattaaagg gaaacctgtc ttggagttac cagaaaggaa agtatttatt
     2101 cagcacatta ctctgtcagt cgaagagaga aagatttatc aatctgttaa aaatgaaggc
     2161 aaagctacta ttgcaaggta ttttactgaa ggtactgtcc ttgcacacta tgcagatgtc
     2221 ttgggtcttc tgcttagact gcggcagatt tgttgtcatg tccatcttcc tacaaatgga
     2281 acgtcttcaa gtgacccctc cagaagcgac acacctgaag aactgaggaa gatgttagta
     2341 acgaagatga agttaattct gagctctggt tcagatgaag aatgttcaat ttgcctggat
     2401 tcattaacat ttcctgtgat cacacattgt gcacatgtgt tttgtaaacc ttgcatttgc
     2461 caggtcattc agcgcgagca gccacatgca aagtgtcctt tatgcagaag taatatacat
     2521 ggacataatt tattagaatg tcctccagaa gaattggcat gtgacagtga caacaagtcc
     2581 gatatggaat ggacgtccag ttcaaagatt aatgctctaa tgaatgcttt gattgagtta
     2641 cggacaaagg accccaacat aaaaagttta gttgtctctc agtttaccac attcctgtct
     2701 ttaatagaaa caccactgaa agcctcagga tttgtgttta ctcgcttaga cggttccatg
     2761 gctcaaaaga aaagagttga atcaattcag tgttttcaaa atacagacgc aggatcacct
     2821 actataatgc tactgtcctt aaaagcaggc ggagtcggct tgaatctttg tgcagcttct
     2881 cgagtgttct taatggaccc agcctggaat cctgctgcag aggatcagtg ctttgaccga
     2941 tgccatcgac ttggccagaa acaagaggtt atcattacaa agttcattgt gaaggattct
     3001 gttgaagaaa atatgttgaa aatacaaaac atgaaaagag agcttgcagc cggagccttt
     3061 ggaactaaga aaacagatgc tgatgaaatg aaacaagcta aaatcaatga aatcagaact
     3121 ttaattgatc tataatttgt gggggttttc taacgacagt ttgaatagat acttaagttt
     3181 tatagattaa aacactgcag atttaagaat gagatctaga gagtcctttt tttttttttt
     3241 tccggagctg ggtaccgaat ccagggcctt gcgcttgcta ggcaagcgct ctaccactga
     3301 gctaaatccc caacccctag agagtacttt ttatgtgggg catattttat attaatacag
     3361 tggtgttact gacacatctc ttctattcac ttttatgata cttcaaatag cagtaagttc
     3421 cattgtaacc tggcctgaaa gaccttttca tagacgttcc tttgctctcc agctcttcat
     3481 gcctttgctg agtattttcc tacatttccc atgtgttcca tatcttctct gaagtgtggt
     3541 cgaagcttat acttttgaac cacttattca ccaaagcctt tggttgatga ttcaatggat
     3601 ccacagttct tgtaaattat taacagatgt atacagacta taagatttta ttgatgttca
     3661 aaaatttatg catccataaa ggaccaaagt tcagagggca agttaattga aatttttttc
     3721 tttgttgaga tatgtgactc gccatatgtg tttagagaaa atttagagag aaaaaaagta
     3781 cgtttatttt agtgaagtgg tacattcatt attaaatgtg ataatagagg tagaggtata
     3841 aataatatga aggggtgagg gaaccagttc tacccggttt gttttgaatg cttaaattat
     3901 gtaatttaaa tagataatct ttacttatgt aggtcttttg gaaataactt tataaattta
     3961 acacagagga ctactactaa acgtgagagg tatgataatc ggcatggaag ttgggctggt
     4021 tgaccaccaa agttcaattc ttaaagacat cttaatcctg aatataaaaa tgcctttgtg
     4081 ggtttagaat tagaatttaa ttttggcatt ttcctaattg atctgttcat ttaaaacccg
     4141 ttttctgggt agttgatgac tatgactcat atttaaaaca agcagtcagg atagataaca
     4201 atagctttat tttcctgtgt tgttgttgct gttgttttga atccagagac aagatgacta
     4261 agaaaagctt catggtttat ggtgcagact gaagaacaac gaagatttta tttatgctac
     4321 agaagacttg actaagagag gtgatcgata gccttgtaaa gagtacacca catgtctgac
     4381 tcactaatcc tccctaacgt gttattcctc cgcgggaaca ggattagcca gcaagcatct
     4441 tctcagttcc gcgtctcaga gcagccaggg gaggtggagc agtgtccagc tcaggaagac
     4501 tttctggagg gtaggaagtg gaataactgg gattggcctg ctgggggtag tagcccacag
     4561 gagttttttc accttgtagg actagtatca tacacaaatc aagtctcatt atgtatgaca
     4621 ttagaattct ttagttccca tacacagtga acttaagtat aaactggtta tggcccaaat
     4681 aaacaagaaa cccagtttac ttattttaat tacaaataga ctgaggctca aaagtaaagg
     4741 ccatgtgctt cttccccaga aaaccacaga gctatgctat aaaactttga gaacaatcaa
     4801 gtttggtgtt aataaaaaaa gttaattcta agatacatga atcactggaa tgaaaaaatt
     4861 tacgctgtgc tattttacta cttagaaatg tactgaaaat attctatttc aaattgtgtt
     4921 tccaactgga tttttcttta aattaaaaaa aaatcaataa aaacctaaaa aatta
//
