LOCUS       XM_039099162            3383 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hexokinase domain containing 1
            (Hkdc1), transcript variant X1, mRNA.
ACCESSION   XM_039099162
VERSION     XM_039099162.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099162.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3383
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3383
                     /gene="Hkdc1"
                     /note="hexokinase domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 26 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100364027"
                     /db_xref="RGD:2321830"
     CDS             1..2748
                     /gene="Hkdc1"
                     /codon_start=1
                     /product="hexokinase HKDC1 isoform X1"
                     /protein_id="XP_038955090.1"
                     /db_xref="GeneID:100364027"
                     /db_xref="RGD:2321830"
                     /translation="MFAVHLVAFYFTKLKEDQIKKVDRFLYHMRLSDETLVDIMARFQ
                     AEMEKGLGKDTNPTASVKMLPTFVRAIPDGSENGEFLSLDLGGSKFRVLKVQVSEEGK
                     QNVQMESQFYPMPNEITRGNGTELFDYVADCLADFMKTKDLTHKKLPLGFTFSFPCRQ
                     NKLEEGFLLSWTKKFKARGVQDTDVVNRLATAMKKHKDLDVDILALVNDTVGTMMTCA
                     YDDPNCEVGVIIGTGTNACYMEDMSNIDLVEGDEGRMCINTEWGAFGDDGTLEDIRTE
                     FDRELDLGSLNPGKQLFEKMISGLYMGELVRLILLKMAKVGLLFGGAKSSALHTKGKI
                     ETQHVAAMEMSKEGLANTREILVDLGLDPSESDCIAVQHVCTIVSFRSANLCAAALAA
                     ILTRLRENKKLARLRTTVGMDGTLYKTHPQYPKRLHKVVRRLVPNCDVRFLLSESGST
                     KGAAMVTAVASRVQAQRKQIDKVLALFHLTREQLLGVRDKMRAELEYGLKKKTHALAT
                     VKMLPTYVYGMPDGTEKGKFLALDLGGTNFRVLLVKIRKRSVRMYNKIFAIPLEIMQG
                     TGEELFDHIVQCIADFLDYMGLKGAQLPLGFTFSFPCRQTCIDKGTLVGWTKGFKATD
                     CEGEDVVDMLREAIKRRNEFDLDIVAIVNDTVGTMMTCGYEDPRCEIGLIAGTGSNVC
                     YMEEMRNIELVDGDEGRMCVNTEWGGFGDNGCIDDIRTQYDKEVDEGSLNAGKQRYEK
                     MTSGMYLGEIVRRILIDLTRQGLLFRGQISERLRTRGIFETKFLSQIESDRLALLQVR
                     RILQQLGLDSTCEDSIVVKEVCGAVSRRAAQMCGAGMAAIVEKRREDQGLQHFKVTVG
                     VDGTLYKLHPHFSRILQETVKDLAPQCDVTFMLSEDGSGKGAALITAVAKRLQQLPKD
                     N"
ORIGIN      
        1 atgtttgcag ttcacttagt ggcgttttac ttcaccaagc tgaaagagga ccagatcaag
       61 aaggtggaca ggttcctgta ccatatgcgg ctctcggatg agacccttgt ggacatcatg
      121 gcccgattcc aggccgagat ggagaaaggc ttagggaagg acaccaaccc cactgcctca
      181 gtgaagatgc tgcccacatt cgtcagggcc attccagatg gctcagaaaa cggggaattc
      241 ctttccctgg atctcggagg gtccaagttt cgggtcctga aggtgcaagt ctcggaagag
      301 ggcaagcaaa atgtccagat ggagagccag ttctacccaa tgcccaatga aatcacccgt
      361 gggaatggca cggagctctt tgactatgta gctgactgcc tggcagattt catgaagacc
      421 aaagatctga cgcacaagaa gctgcctctg ggcttcacct tttcttttcc ctgcagacag
      481 aataagttgg aggagggctt cctgctgtca tggaccaaga agttcaaggc ccggggagtt
      541 caggacacag acgtggtgaa ccgtctggcc accgccatga aaaagcacaa ggacctggac
      601 gtggacatcc tggccttggt taacgacact gtggggacca tgatgacttg tgcttatgat
      661 gatcccaact gtgaggtcgg cgttatcatt ggaacaggca ccaacgcgtg ttacatggag
      721 gacatgagca acatcgacct tgtggaaggg gacgagggaa ggatgtgcat caacacggag
      781 tggggggcct tcggggacga tggcactttg gaggacattc gcaccgagtt tgacagagag
      841 ttggacctgg gctcactcaa ccccgggaag cagctgttcg agaagatgat cagcgggctg
      901 tacatggggg agctggtcag gctcatcttg ctgaagatgg ccaaagttgg tctcctgttt
      961 gggggtgcaa agtcctccgc tctccacaca aagggcaaga ttgaaacaca gcacgtggct
     1021 gccatggaga tgagtaaaga aggcctggcc aatacgagag agatcctggt ggatttgggc
     1081 ctggacccct ctgagtcaga ctgcatcgct gtccagcacg tgtgcaccat cgtctctttt
     1141 cgctcggcca atctctgcgc cgctgcgctg gcagccatct tgactcgcct ccgagagaac
     1201 aagaagctgg cccggctccg caccacggtg ggcatggatg gaaccctcta caaaacacac
     1261 cctcagtacc ccaaacgcct acacaaagtg gtgaggaggc tggtcccaaa ctgtgatgtc
     1321 cgcttcctcc tatcagagag cggaagcacc aaaggggctg ccatggtgac cgcagtggcc
     1381 tctcgggtgc aggcccagcg taagcagatc gataaggtgc tggctttgtt ccatttgacc
     1441 cgagagcaac tcctgggtgt gcgggacaag atgcgggctg aacttgagta tgggctgaag
     1501 aaaaaaactc acgctctggc tacagtgaag atgcttccca cctacgtcta tgggatgccc
     1561 gatggcacag agaaaggaaa gttccttgcc ctggacttgg ggggaactaa cttccgcgtc
     1621 ctccttgtaa agatcaggaa gaggtcggtg cgaatgtaca acaagatctt tgccatccct
     1681 ctggagatca tgcagggcac tggagaggag ctctttgacc acattgtgca gtgcatcgct
     1741 gacttcctgg actatatggg cctcaagggc gcccagctgc ctttgggctt cacattctcc
     1801 ttcccctgca gacaaacatg catcgacaag gggactctag taggatggac caaaggcttc
     1861 aaggccaccg actgtgaagg ggaggacgtg gtggacatgc tcagagaagc catcaagagg
     1921 agaaacgagt ttgacctgga catagttgca atcgtgaatg acacggtggg gaccatgatg
     1981 acctgtggct atgaggatcc ccggtgtgag attggcttga ttgcagggac aggaagcaac
     2041 gtgtgctaca tggaagaaat gaggaacatt gagctggtgg acggggatga aggccggatg
     2101 tgcgtcaaca cggagtgggg cgggtttggc gacaacggct gcatagatga catccgcacg
     2161 cagtacgaca aggaggtgga tgagggctcc ctgaatgccg gcaaacagag gtacgagaaa
     2221 atgaccagtg ggatgtacct gggggagatt gtgaggcgga tcctgatcga cctcacccgg
     2281 caggggctcc tcttccgagg gcagatttca gagcgactcc ggaccagggg tatctttgaa
     2341 accaaattcc tgtctcagat tgaaagtgac cggctggccc tcctgcaggt caggaggatc
     2401 ctgcagcagc tgggcctgga cagcacctgc gaagacagca ttgtggtgaa ggaggtgtgc
     2461 ggggctgtgt ctcggagggc tgcccagatg tgcggcgccg gcatggctgc catcgtggag
     2521 aaaaggagag aagaccaggg cctccagcac ttcaaggtca ctgtgggcgt ggacggcacc
     2581 ctgtacaagc tgcacccaca cttctcccgg atactgcagg agacagtgaa ggacctggct
     2641 cctcagtgcg acgtgacttt catgttgtca gaagacggca gcgggaaggg agcagctctg
     2701 atcacagctg tagccaagag gttacagcag ctgccgaagg acaactaggt ggcccagcct
     2761 gtggtgacag gggccaccag acgaccgctg ggctgacctt cctctcttag tactcttagc
     2821 atcccggtgc tggcctggca gtgacgctcg gcgacacctc catttggcat attttggcca
     2881 aagacgggct gactttaaaa aaatcaaagg atctggcccc agagacgccc atttggcaag
     2941 tctttcactt gagctgtgag cattcaatgg tatccggtct tggggttgct ggagcctccc
     3001 tttccaggca ttaagctacg tctggtggga gactgggcct gaacccttga gaggaagaag
     3061 ggcgtagtga actcggggat ctaggctact atggcctcac ttgtcatatt ggctttagag
     3121 gccccggggg tggggtgggg tgggacaagg gctttggcac ctgcatctcc gagaatcgag
     3181 gagcccactg aagccaggag gaatgtcacc ctctcagggc actctgtgaa cacctggggt
     3241 gccattgccc atgtgtatat tgtggggtgg gacaccattc gaggtactat ttctcattcc
     3301 tgtgacgctg ctgtctgcct ttgtttcgga ctgtgaggtg tatgagtacg ggtccatgaa
     3361 taaaagaaac gggtttccag gaa
//
