LOCUS       NM_022647                969 bp    mRNA    linear   ROD 23-APR-2024
DEFINITION  Rattus norvegicus histone cluster 1, H2bg (Hist1h2bg), mRNA.
ACCESSION   NM_022647
VERSION     NM_022647.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Navabpour,S., Farrell,K., Kincaid,S.E., Omar,N., Musaus,M., Lin,Y.,
            Xie,H. and Jarome,T.J.
  TITLE     Monoubiquitination of histone H2B is a crucial regulator of the
            transcriptome during memory formation
  JOURNAL   Learn Mem 31 (3), a053912 (2024)
   PUBMED   38580378
  REMARK    GeneRIF: Monoubiquitination of histone H2B is a crucial regulator
            of the transcriptome during memory formation.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Kido,T. and Lau,Y.F.
  TITLE     The rat Tspy is preferentially expressed in elongated spermatids
            and interacts with the core histones
  JOURNAL   Biochem Biophys Res Commun 350 (1), 56-67 (2006)
   PUBMED   16996029
REFERENCE   3  (bases 1 to 969)
  AUTHORS   Golebiowski,F. and Kasprzak,K.S.
  TITLE     Inhibition of core histones acetylation by carcinogenic nickel(II)
  JOURNAL   Mol Cell Biochem 279 (1-2), 133-139 (2005)
   PUBMED   16283522
REFERENCE   4  (bases 1 to 969)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   5  (bases 1 to 969)
  AUTHORS   Choi,Y.C. and Chae,C.B.
  TITLE     The genomic and sequence analysis of rat histone H2B genes
  JOURNAL   DNA Seq 9 (5-6), 353-358 (1998)
   PUBMED   10524764
REFERENCE   6  (bases 1 to 969)
  AUTHORS   Huh,N.E., Hwang,I.W., Lim,K., You,K.H. and Chae,C.B.
  TITLE     Presence of a bi-directional S phase-specific transcription
            regulatory element in the promoter shared by testis-specific TH2A
            and TH2B histone genes
  JOURNAL   Nucleic Acids Res 19 (1), 93-98 (1991)
   PUBMED   2011515
REFERENCE   7  (bases 1 to 969)
  AUTHORS   Kim,Y.J., Hwang,I., Tres,L.L., Kierszenbaum,A.L. and Chae,C.B.
  TITLE     Molecular cloning and differential expression of somatic and
            testis-specific H2B histone genes during rat spermatogenesis
  JOURNAL   Dev Biol 124 (1), 23-34 (1987)
   PUBMED   3666307
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Oct 24, 2022 this sequence version replaced NM_022647.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643293.71990.1,
                                        SRR26360181.2669051.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-969               JAXUCZ010000017.1  41999269-42000237
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..969
                     /gene="Hist1h2bg"
                     /gene_synonym="H2b; Hist1h2bl"
                     /note="histone cluster 1, H2bg"
                     /db_xref="GeneID:64647"
                     /db_xref="RGD:621439"
     exon            1..969
                     /gene="Hist1h2bg"
                     /gene_synonym="H2b; Hist1h2bl"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..425
                     /gene="Hist1h2bg"
                     /gene_synonym="H2b; Hist1h2bl"
                     /note="histone 2b; histone 1, H2bl; histone cluster 1,
                     H2bl"
                     /codon_start=1
                     /product="histone H2B type 1"
                     /protein_id="NP_072173.2"
                     /db_xref="GeneID:64647"
                     /db_xref="RGD:621439"
                     /translation="MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYK
                     VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL
                     LPGELAKHAVSEGTKAVTKYTSSK"
ORIGIN      
        1 aacaactctt tctgttcttt cttggtgttc acactctgtt gacgatgcct gagcccgcca
       61 agtccgctcc cgccccgaag aagggctcca agaaggctgt gaccaaggcc cagaagaagg
      121 acggcaagaa gcgcaagcgc agccgcaagg agagctactc ggtgtacgtg tacaaggtgc
      181 tgaagcaagt gcacccggat accggaatct cttccaaggc catgggcatc atgaactcgt
      241 tcgtgaacga catcttcgag cgcatcgcgg gagaggcgtc gcgcctggcg cattacaaca
      301 agcgctcgac catcacgtcc cgggagatcc agacggccgt gcgcctgctg ctgcccgggg
      361 agctggccaa gcacgcggtg tccgagggca ccaaggcagt caccaagtac accagctcca
      421 agtgagccca cagagctcac aacagatcca aaggctcttt tcagagccac taagatttca
      481 aaattagagc tttactactg ccttagtaac tactggcaaa taagccctca caaggtgtag
      541 gactatttta agattcattt actagcgtat ggaatacaca atatcccatc accagtgttt
      601 ctgcgtgggc tatttaatgg tttgaattcc acctttaagt ggaatgtgct taataaaaca
      661 aactccaaac aaaaggctat tctcaaagcc tcctagatat gtcaataggt ctggtaacct
      721 tgattatgaa actgaggtga aacaaagaat acagtgtttg attggaacat aatgatattt
      781 ggtggctcgc tttttggata caatgtatcc tgcttagtca actttaagtt ttaacctcta
      841 tcaggttccc tccacttcta gcacttaatg aaatatgact acaaaataaa gacttgaaag
      901 caggatatgt atcccatatc agaattatca agttgtcaga ggcttgaagc acaataaatt
      961 tctcttgct
//
