LOCUS       NM_001013056             913 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Rattus norvegicus histone cluster 1 H2a family member I like 1
            (Hist1h2ail1), mRNA.
ACCESSION   NM_001013056 XM_225393
VERSION     NM_001013056.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Maehara,K., Harada,A., Sato,Y., Matsumoto,M., Nakayama,K.I.,
            Kimura,H. and Ohkawa,Y.
  TITLE     Tissue-specific expression of histone H3 variants diversified after
            species separation
  JOURNAL   Epigenetics Chromatin 8, 35 (2015)
   PUBMED   26388943
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Kato,D., Osakabe,A., Tachiwana,H., Tanaka,H. and Kurumizaka,H.
  TITLE     Human tNASP promotes in vitro nucleosome assembly with histone H3.3
  JOURNAL   Biochemistry 54 (5), 1171-1179 (2015)
   PUBMED   25615412
REFERENCE   3  (bases 1 to 913)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 913)
  AUTHORS   Urahama,T., Horikoshi,N., Osakabe,A., Tachiwana,H. and
            Kurumizaka,H.
  TITLE     Structure of human nucleosome containing the testis-specific
            histone variant TSH2B
  JOURNAL   Acta Crystallogr F Struct Biol Commun 70 (Pt 4), 444-449 (2014)
   PUBMED   24699735
REFERENCE   5  (bases 1 to 913)
  AUTHORS   Todd,M.A. and Picketts,D.J.
  TITLE     PHF6 interacts with the nucleosome remodeling and deacetylation
            (NuRD) complex
  JOURNAL   J Proteome Res 11 (8), 4326-4337 (2012)
   PUBMED   22720776
REFERENCE   6  (bases 1 to 913)
  AUTHORS   Hake,S.B., Garcia,B.A., Duncan,E.M., Kauer,M., Dellaire,G.,
            Shabanowitz,J., Bazett-Jones,D.P., Allis,C.D. and Hunt,D.F.
  TITLE     Expression patterns and post-translational modifications associated
            with mammalian histone H3 variants
  JOURNAL   J Biol Chem 281 (1), 559-568 (2006)
   PUBMED   16267050
REFERENCE   7  (bases 1 to 913)
  AUTHORS   Tagami,H., Ray-Gallet,D., Almouzni,G. and Nakatani,Y.
  TITLE     Histone H3.1 and H3.3 complexes mediate nucleosome assembly
            pathways dependent or independent of DNA synthesis
  JOURNAL   Cell 116 (1), 51-61 (2004)
   PUBMED   14718166
REFERENCE   8  (bases 1 to 913)
  AUTHORS   Preuss,U., Landsberg,G. and Scheidtmann,K.H.
  TITLE     Novel mitosis-specific phosphorylation of histone H3 at Thr11
            mediated by Dlk/ZIP kinase
  JOURNAL   Nucleic Acids Res 31 (3), 878-885 (2003)
   PUBMED   12560483
REFERENCE   9  (bases 1 to 913)
  AUTHORS   Chen,H.Y., Sun,J.M., Zhang,Y., Davie,J.R. and Meistrich,M.L.
  TITLE     Ubiquitination of histone H3 in elongating spermatids of rat testes
  JOURNAL   J Biol Chem 273 (21), 13165-13169 (1998)
   PUBMED   9582357
REFERENCE   10 (bases 1 to 913)
  AUTHORS   Choi,Y.C., Han,B.D. and Chae,C.B.
  TITLE     A B2-L1 composite between rat histone H2A and H3 genes
  JOURNAL   Mamm Genome 5 (1), 52-54 (1994)
   PUBMED   8111130
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Nov 25, 2022 this sequence version replaced NM_001013056.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript is intronless :: FQ227095.1, SRR26360176.2292523.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-913               JAXUCZ010000017.1  41996216-41997128   c
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..913
                     /gene="Hist1h2ail1"
                     /gene_synonym="H3 histone; Hist1h2ail"
                     /note="histone cluster 1 H2a family member I like 1"
                     /db_xref="GeneID:291159"
                     /db_xref="RGD:1311554"
     exon            1..913
                     /gene="Hist1h2ail1"
                     /gene_synonym="H3 histone; Hist1h2ail"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..428
                     /gene="Hist1h2ail1"
                     /gene_synonym="H3 histone; Hist1h2ail"
                     /note="histone 1, H2ai; histone cluster 1, H2ai-like1"
                     /codon_start=1
                     /product="histone H3.1"
                     /protein_id="NP_001013074.1"
                     /db_xref="GeneID:291159"
                     /db_xref="RGD:1311554"
                     /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRP
                     GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLV
                     GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
ORIGIN      
        1 atctttttct tcctaccatg gcccgtacta agcagaccgc tcgcaagtcc accggcggca
       61 aggctccgcg caagcagctg gccaccaagg ctgcccgtaa aagtgccccg gccaccggtg
      121 gcgtgaagaa gccccatcgc taccgtccgg gtaccgtagc gttgcgtgag atccggcgct
      181 accagaagtc gaccgaactg ctgatccgca agctgccgtt ccagcgcctg gtgcgcgaga
      241 tcgctcagga cttcaagacc gacctgcgct tccagagctc ggccgtcatg gcgctgcagg
      301 aggcctgtga ggcctacctt gtgggtctgt ttgaggacac caacctatgc gccatccacg
      361 ccaagcgtgt gaccatcatg cccaaggaca tccagctggc ccgccgcatt cgtggcgaga
      421 gggcttgagg agttctgtga tccacgcaac cactttaaaa ggctcttttt agagccacta
      481 atcttccaaa gaaagagctg aagcgttctt tcgtaactag tgggttttaa tatgtcagct
      541 aaggaattta aacttctacg tacttatcag atttatcaca agcatgcaag tatttgtata
      601 agtatagtgt taggatgtga gctacaagat tccctgtaaa atcagaggct gcatttgtgt
      661 atgtggtgtg caaggattct gtttaatgct ggggcttccc tctggattcc tttttctgac
      721 atccctctta catggaaatt gtacatctat ttagagtaag ttatccacct aaagacccgg
      781 atatataaag ccttggtgca tggttacagt taagcattta cggaaggtga aataggattt
      841 tttagtagat gtgtatgctt tgtaattgtg aaccatttcc gagggaaagg actagtaatg
      901 taactgcaaa aaa
//
