LOCUS       NM_001399662            1887 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus HIRA interacting protein 3 (Hirip3), transcript
            variant 1, mRNA.
ACCESSION   NM_001399662 XM_006230307
VERSION     NM_001399662.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Assrir,N., Filhol,O., Galisson,F. and Lipinski,M.
  TITLE     HIRIP3 is a nuclear phosphoprotein interacting with and
            phosphorylated by the serine-threonine kinase CK2
  JOURNAL   Biol Chem 388 (4), 391-398 (2007)
   PUBMED   17391060
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006230307.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1551808.1,
                                           SRR26360190.657761.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JAXUCZ010000001.1  190903065-190903142
            79-199              JAXUCZ010000001.1  190903226-190903346
            200-308             JAXUCZ010000001.1  190903447-190903555
            309-1228            JAXUCZ010000001.1  190903812-190904731
            1229-1397           JAXUCZ010000001.1  190904801-190904969
            1398-1496           JAXUCZ010000001.1  190905050-190905148
            1497-1887           JAXUCZ010000001.1  190905220-190905610
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..1887
                     /gene="Hirip3"
                     /note="HIRA interacting protein 3"
                     /db_xref="GeneID:361650"
                     /db_xref="RGD:1306463"
     exon            1..78
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..1660
                     /gene="Hirip3"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="HIRA-interacting protein 3 isoform 1"
                     /protein_id="NP_001386591.1"
                     /db_xref="GeneID:361650"
                     /db_xref="RGD:1306463"
                     /translation="MAPGDEMLEFTRSFFRACPDLSTVTHSIVRQKFLIHVGRDHLEP
                     EEKQALKRLMEEELLKMQADAGTREGKPDFIKVKRSPAPCSHPERKRFRFNSESESSS
                     TPSSPDCSGPPTKNNTTKKACPRRTLKKAVESTDEEQQTDLVAKMGLEESSEEEEEGS
                     VRSGEVWKAEDTEDDDVRKEQKGGVRKKAGAKNKPAPHKADRKQAREESGSSEEEAVQ
                     NRAKVERRTGAKCQEESEDSEDEILAKKSEHRESRLKSSKAGRTASGRKSSKQKSRAG
                     RPTGGLGDSEEKKEGDAVSSGDSSGEEEPLAKRKSKDKTQTESGRRQSTSSEDDDGRQ
                     VQAATQGTTKTGSLGSSNGDSGTEREVSDSQAGQNTKEERKSRSSKKSSKNGKARSSS
                     SSSDASPEPTGQKAGSRRCGEDHPAVVRLKRYIWACGARRNYKKLLGSCGSHKERLNV
                     LRAELEALGMKGNPSLEKCRALKQHREEAAEVASLDVANIISSSGRPRRRNAWNPSGE
                     AISPGELYHRTLDSDEERPRQAPPDWSHMRGIISSDGESS"
     exon            79..199
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
     exon            200..308
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
     exon            309..1228
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1397
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1496
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1887
                     /gene="Hirip3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccagtggcgc aagatggcgc cgggagatga gatgctggaa ttcactcgca gcttctttcg
       61 agcttgcccc gatctcagca cggttactca ctccatcgtg cgacagaaat ttttgattca
      121 cgtgggtcgg gatcatcttg aacctgagga gaagcaggcg ttgaaaaggc tgatggagga
      181 ggagctgctg aagatgcagg cggatgctgg taccagggaa ggaaagccag actttatcaa
      241 agttaagagg tctcctgctc cctgcagtca cccagagagg aaaaggttcc gcttcaattc
      301 agagtcagaa tccagctcta caccatccag cccagactgc tcaggacctc caacaaagaa
      361 caatacaacc aagaaggcat gcccaagaag aaccttaaag aaagcagttg agagcacaga
      421 tgaagagcag caaacagacc tggttgcaaa gatgggattg gaggagagta gtgaggagga
      481 ggaagaaggc tctgtcagat caggtgaggt ctggaaggca gaggacactg aggatgatga
      541 tgtgagaaaa gaacagaagg gtggggttag aaagaaagct ggggccaaga acaagccagc
      601 accacacaag gcagatagga agcaggctag ggaagagagt ggaagcagtg aggaagaggc
      661 tgtacagaat agagcaaagg tggagagacg cacaggcgct aaatgccagg aggaaagtga
      721 agacagcgag gatgagatcc tagccaagaa gagcgagcac agggagtcca gactgaaaag
      781 cagcaaagca gggagaacag ctagcgggag aaagagctct aagcagaaaa gcagggctgg
      841 gaggccaact ggaggcttgg gagacagcga ggaaaagaag gaaggggatg cagtaagtag
      901 tggggacagc agtggagagg aagagccttt agcgaagaga aagagcaagg acaagaccca
      961 gactgagagt gggagaaggc agagcacaag cagcgaggat gatgatggca ggcaggtgca
     1021 agcagccact caaggcacta cgaagacggg cagcctaggc agcagtaatg gtgacagtgg
     1081 cacggagagg gaagtgagtg attcccaggc aggacagaac accaaagagg agaggaagag
     1141 ccgctcttcc aagaagagct ccaagaacgg caaggcacga agttcctcat cttcatcaga
     1201 tgcaagccca gaacccacag gtcagaaggc tggctctcgt cgctgtggag aggaccaccc
     1261 agctgtggtt agactaaagc ggtatatttg ggcttgtggt gcccgacgaa actacaagaa
     1321 gctgctgggc tcctgtggct cccacaagga gcgcctgaat gtcctcaggg ctgagctgga
     1381 agcactgggc atgaagggta atccttcctt agagaagtgt cgggctctga agcagcatcg
     1441 ggaagaggca gctgaagtgg cttccttgga tgttgccaat atcatcagca gttcaggccg
     1501 accacgaaga cgaaatgcat ggaacccttc aggggaagca atctctccag gggagcttta
     1561 tcaccgaacc ctggactcag atgaggagcg gccacgtcaa gcacctccag actggtctca
     1621 tatgcgtggt atcatcagca gtgatggtga gagtagctga actccatgtc caggatggac
     1681 caataccctg ttatacaagt gcttgtagca ctgaagcaac tttcaaagac agactacagc
     1741 agcaggatcc aagttatcgg tacactactc aatttcatat tctctaaggt ggttttgggg
     1801 tttgtgtgca aacagcctct taaagcattt gaggcggttg ttgttttatt tttaaagact
     1861 caataaaatg taattacttt atccaaa
//
