LOCUS       XM_002729915            2828 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus histone H4 transcription factor
            (Hinfp), mRNA.
ACCESSION   XM_002729915
VERSION     XM_002729915.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002729915.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002729915.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-646               JACYVU010000198.1  6456954-6457599     c
            647-976             JACYVU010000198.1  6454137-6454466     c
            977-1206            JACYVU010000198.1  6451205-6451434     c
            1207-1318           JACYVU010000198.1  6450839-6450950     c
            1319-1471           JACYVU010000198.1  6450505-6450657     c
            1472-1549           JACYVU010000198.1  6449978-6450055     c
            1550-1670           JACYVU010000198.1  6449773-6449893     c
            1671-1809           JACYVU010000198.1  6449550-6449688     c
            1810-1934           JACYVU010000198.1  6449349-6449473     c
            1935-2283           JACYVU010000198.1  6448191-6448539     c
            2284-2828           JACYVU010000198.1  6447644-6448188     c
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2828
                     /gene="Hinfp"
                     /note="histone H4 transcription factor; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 2 long SRA reads, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 192 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:300665"
                     /db_xref="RGD:1311492"
     CDS             805..2391
                     /gene="Hinfp"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: histone H4 transcription
                     factor"
                     /protein_id="XP_002729961.2"
                     /db_xref="GeneID:300665"
                     /db_xref="RGD:1311492"
                     /translation="MSPPGKVPRKENLGLQCEWGSCSFVCSAMEEFFDHVTQHLQQHI
                     HGSKEEEEEEDLLEEEFSCLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQS
                     QADLSPCILDFQSRNVIPDTPDHFLCLWEHCESVFDNPEWFYRHVDAHSLCCEYQAVS
                     KDNHVVLCGWKGCTCTFKDRCKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQ
                     TSLDQQRFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHS
                     EDRPFKCDCCDYSCKNLIDLRKHLDTHSKESAYRCDFENCSFSARSLSSVKSHHRKVH
                     EGDSEPRYKCHVCDKCFTRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVR
                     YESVELTQQLLQQLQEGSDPGLALNESSLQGIVLETVLGGPGPEEETEEEGRVVEGTA
                     LSASQDNPSSALHMVSQTDAQGQRDLVYYVLSEAPGEPPPVSETLKRDGKASRDTRGA
                     RRPDGLRLQSLTSPTPDLGV"
ORIGIN      
        1 atgggcgtca ttctcgaata gaattgaagt gatcaagtgt ttaagaaagc agaatcctgg
       61 gctggggttg tgtggctgtt ggtagagtgc tccattgaat gaatgcccca ctatcattta
      121 aacttgatga agtgccatat tgggcagcaa atacagatgg gtctctgtga gttcaaggtc
      181 aatctggggt acataaaaca gagaagacca agaaaatcaa agaaggtggg atcccagtgc
      241 gaacaatcca gctaactgaa ccacggatgc tgtgaagact gaccgggcta agctaagcgc
      301 atgcccagta ggtggttggc gcggagtttg cgcagtagtg ggaattcaag cctcaaagct
      361 tcccgcctgc gcacagtcag gagcaggccc aacccacttt tgaaggtgac gctaacatta
      421 tccacatccg gtcgaacctc actgtacccc ttgggactgg acgctctctc cggaacgatt
      481 cccgcctctt ccgtgttttg gtgcgcacgg ttctgtcaga cgcagcggcc attggctgtc
      541 ggtcgactcg agagcagcga ttggctgtcg cttgtcgtcg ctcaaacgcc tcagggtata
      601 tggtgtgagg tgggtggggc gctgggcagc ccagcggcgc tggcaggaaa ccagacagat
      661 tcttgagaaa gtgctggtcc atctctactg aaaaaagcca tgagatactg aaaagtacct
      721 gctggctctc ggtgggctgc tcgcctgcac tggaacacag tcttacagct ctgcatttct
      781 tcctcttctt ctgggccaaa ggccatgtca cctcctggaa aagttccccg gaaggagaac
      841 ctggggctcc agtgtgagtg ggggtcctgc tcctttgtgt gctcagccat ggaggagttc
      901 ttcgaccatg tcactcagca cctgcagcag cacatacatg gctctaagga ggaggaagaa
      961 gaggaggatc tgctagagga agaattctcc tgcttgtggc aggagtgtgg cttttgctct
     1021 ctggacagtt ctgccgacct catccgccat gtctacttcc actgctacca caccaagctg
     1081 aaacagtggg ggctgcaagc cttgcaaagc caggctgacc tcagcccctg catcctggac
     1141 ttccagagcc ggaacgtcat ccctgacacc cctgaccatt tcctgtgcct gtgggagcat
     1201 tgcgagagtg tcttcgacaa tcctgagtgg ttctatcggc acgtggatgc gcacagcctg
     1261 tgctgtgaat accaagctgt cagcaaggac aaccatgtgg tgctgtgtgg ctggaaaggc
     1321 tgtacctgta ccttcaagga ccggtgtaag cttcgagaac acctccgcag ccacacccag
     1381 gagaaggtgg tggcctgtcc cacttgtggg ggcatgtttg ccaacaacac caagttccta
     1441 gatcacatcc gtcggcagac ctcattggat cagcagcgtt tccagtgctc ccactgttcc
     1501 aagagatttg ccacagagag gctcttgcgt gatcacatgc ggaaccatgt gaatcactat
     1561 aaatgccctt tgtgtgacat gacctgccca ctgccttctt ccctccggaa tcacatgcgc
     1621 tttcgacaca gtgaagaccg gccctttaaa tgtgactgtt gtgactacag ctgtaagaat
     1681 ctgattgacc tccggaagca cctggacacc cacagcaagg agtcagccta caggtgtgac
     1741 tttgagaact gcagtttcag tgcccgatcg ctcagctccg tcaagtccca tcaccgcaaa
     1801 gtgcatgaag gagactcaga gccaaggtac aaatgtcatg tctgtgacaa atgcttcact
     1861 cgtggcaaca acctcactgt gcaccttcgc aagaagcacc agttcaagtg gccctcagga
     1921 caccctcgtt ttcggtacaa ggagcatgag gatggctaca tgcggctaca gctagttcgg
     1981 tatgagagtg tggagctgac acagcagttg ctgcagcagc tacaagaagg atcagatcca
     2041 ggattggcac tgaatgagag cagcctccag ggcatcgttc tagaaacagt gctagggggg
     2101 ccaggacctg aggaagagac agaagaagaa ggtagggttg ttgaggggac agccctctca
     2161 gcttctcagg acaaccccag ttctgccctc catatggtca gtcagacaga tgcccaaggc
     2221 cagcgagacc ttgtctacta tgtgctgtcc gaagccccag gagagccccc gccagtctct
     2281 gaaaccctca agagagatgg aaaagcttca agggataccc gaggagccag acgtccagat
     2341 gggctgaggc tgcagagcct gaccagtcct actccagatc ttggagtttg aaccaggcag
     2401 gaagcagtgc ccagcgggca gcctttgttc ttggatgcct ttagaagtgg tgctgagaac
     2461 agtgtttccc ctctgactca ggagacatca ttctgtagac tctggggagt ttggattcac
     2521 tgaggaaatc ctacatgtat gttctcagga gctgttacca ggtttaagca tactcccttg
     2581 gcatgctaga cagtgagtaa atatttagtc cacatccatt ccaatctccc atcgacccag
     2641 ggatgaggga ctgttcctta tgagggccgt ttcctcactg taagttaagc attgagaacc
     2701 aggtgccatt tctctcaagg tttcccttta cattccaggg acacttgtta tcttcaggga
     2761 caggattggg atactgtgtg tgtgtgacag ttattttttt gggaataaaa gaaacacttg
     2821 gggtgtta
//
