LOCUS       XM_039083289            2257 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 3-hydroxyisobutyryl-CoA hydrolase
            (Hibch), transcript variant X6, mRNA.
ACCESSION   XM_039083289
VERSION     XM_039083289.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083289.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2257
                     /gene="Hibch"
                     /note="3-hydroxyisobutyryl-CoA hydrolase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 9 ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:301384"
                     /db_xref="RGD:1308392"
     CDS             598..1674
                     /gene="Hibch"
                     /codon_start=1
                     /product="3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
                     isoform X4"
                     /protein_id="XP_038939217.1"
                     /db_xref="GeneID:301384"
                     /db_xref="RGD:1308392"
                     /translation="MSKHTETAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQL
                     KKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLSQDLFREEYILNNAIAS
                     CQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ
                     GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLES
                     YHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGSPFAMEQIKVINKMSP
                     TSLKITLRQLMEGSTKTLQEVLTMEYRLTQACMEGHDFHEGVRAVLIDKDQTPKWKPA
                     DLKDVTDEDLNSYFKSLGSRDLKF"
ORIGIN      
        1 ggtgatcttt ttcccagcat cagtaaaagt tattgtaaga gggttgcacc agcccttgga
       61 aggctcagtg ttccggcatt cctgggttag agtactgttt ctgttagaat tgtgccaccc
      121 cttttttact gtgatataat cccaagagga ggtaggtttc cagtatgcgt ctcctgtggt
      181 ttcacacccc caggaggcac aatagaattg atccctgtat ccacacttat agtttaggga
      241 gcgatctctg tgggatccgg gacagacata aaagtcagtt tccctaatgt tggtgcgtcg
      301 atggacagtg tcacaaccga catatctttc attaaaacta gacccatgag gggcttcaat
      361 taggggggtg ttccaaggcg aagtggactg ttcaaggtgc ccttgtaata attgttcctg
      421 caccaactgt agggccgctt gaaccttttc ttgaggcatg gaccactgat cgatccagac
      481 tggatcattt gacttccaag atattttatc agcctggagt gcaggaggaa cagcggtctc
      541 tatgaaaaaa ggttcagctc aatcagaaga gccagtgtta ttctgcaaca tctgagaatg
      601 tccaagcaca cagagactgc agaagtgctg ctggagagga gaggctgtgc aggggtcata
      661 acgctcaaca gacccaagtt actcaacgct ctgagtctga atatgatccg gcagatctat
      721 ccgcagctaa agaagtggga acgagaccca gatacattcc tgatcatcat aaagggagct
      781 ggaggaaagg ccttctgtgc tggaggggac atcaaagcac tctcagaagc taaaaaagca
      841 gggcagactt tgagtcaaga tttattcaga gaagaatata tcctgaacaa tgccattgcg
      901 tcttgtcaga aaccgtatgt tgcccttatt gatggaatca caatgggtgg gggagttggt
      961 ctttcagtcc atggtcaatt ccgagtggct acagaaagat ctctctttgc tatgccagaa
     1021 acgggaatag gactgtttcc tgatgtgggc ggaggttatt tcttgccaag acttcaagga
     1081 aaactgggtt acttccttgc actgacagga ttcagactaa aaggaagaga tgtgcacaga
     1141 gcgggaatcg ccacacactt tgtagattca gaaaagttgc atgtactgga ggaggagttg
     1201 ttagccttaa agtccccttc agctgaggat gttgctggtg tcttagaaag ctatcatgcc
     1261 aagtccaaga tgggtcaaga caagtctatc atatttgagg aacacatgga caaaataaac
     1321 agttgttttt cagccaatac tgtggaacag attcttgaaa acttacggca agatggttca
     1381 ccttttgcta tggaacagat taaggttatt aataaaatgt ctccaacgtc actaaagatc
     1441 acactaaggc agctcatgga gggctctaca aagaccttgc aagaagtact gaccatggag
     1501 taccggttaa ctcaagcgtg tatggaaggt catgactttc atgaaggtgt tagagctgtt
     1561 ctcattgaca aagaccagac tccaaaatgg aaaccagctg atctaaaaga tgttactgat
     1621 gaagatttga atagttattt taaatctctg ggaagcaggg atttgaaatt ctgaggttta
     1681 ttttggagca agggtcagca caccatagca gagacgccag gcctggcatc ttggcccatt
     1741 tttgtgcaac ctgcaagctg gaaatagttt tcttgttttt aaatgcttgg gaaagaaatg
     1801 aaaagactaa tgtttcataa tacagtggtt gcctgaagtt taagcaccag tgtttataac
     1861 ttttcctgat gtgacagcta aagttcaaac accaatgttt tatggagcct tcctgcagtg
     1921 gagcggaact tgttccctat ggcttggagt ggccatggca cagacttcat gacccacagc
     1981 acctcaagta tctaagtatc tactgtgatc ttcgtcagaa acggtttgct ggtccctggt
     2041 ttataagaaa attaagagct ccagagaatc ccaagtcatt tctcattaaa acaatgactg
     2101 taatttctac tttatcagta attaaccaaa ttatgtacag attatcagaa tccaaacctt
     2161 gaaatttgga gagggtatat tgatgcctta taaattttct ttttaaacat ttcctacttt
     2221 aaaacaatat tgtagcagaa gaattacttt gtaaaca
//
