LOCUS       XM_229754               2699 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus HHIP like 2 (Hhipl2), mRNA.
ACCESSION   XM_229754
VERSION     XM_229754.9
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086031) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Apr 23, 2024 this sequence was replaced by
            NM_001429605.1.
            
            On Jan 21, 2021 this sequence version replaced XM_229754.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2699
                     /gene="Hhipl2"
                     /note="HHIP like 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 12 long SRA reads, 8
                     Proteins"
                     /db_xref="GeneID:317051"
                     /db_xref="RGD:1311317"
     CDS             46..2184
                     /gene="Hhipl2"
                     /codon_start=1
                     /product="HHIP-like protein 2"
                     /protein_id="XP_229754.4"
                     /db_xref="GeneID:317051"
                     /db_xref="RGD:1311317"
                     /translation="MLGKHRSPHTVSGRPAQWLSPGIFCLGLTFLLGWVGLLQGHPQC
                     LDYGPPFRPPLHLEFCSDYDSFGCCDRRKDRRIAARYWDIMNYFDLKGHELCGGYIKD
                     ILCQECSPYAAHLYDAENPQTPLRNLPGLCSDYCSAFHHNCHSAISLLTNDRGLQESH
                     GKDGARFCHLLNLPDEDYCFPNVLRNDQLNRNLGVVAEDHQGCLQLCLAEVANGLRNP
                     VSMVHAGDGTHRFFVAEQVGVVWVYLPDGSRLEQPFLDLKSMVLTTPWIGDERGFLGL
                     AFHPKFRHNRKFYIYYSCLGKRKVEKIRISQMKVSLSDPNKADPKSERVILEIDEPAS
                     NHNGGQLLFGLDGYLYIFTGDGGQAGDPFGKFGNAQNKSSLLGKVLRIDVNGAGMSAQ
                     RYRVPLDNPFVSEPGAHPAVYAYGVRNMWRCAVDRGDPVTRQGRGRIFCGDVGQNKFE
                     EVDLIVKGGNYGWRAKEGFECYDKNLCHNASLDDILPIYAYGHGVGKSVTGGYVYRGC
                     ESPNLNGLYIFGDFMSGRLMALQEDRKTQKWSKRDICLGNSSCAFPGLISAYSKFIIS
                     FAEDEAGELYFLATSYPSAYAPHGSIYKFVDPSRRAPPGKCKLKPVPVRAKSKKIRFR
                     PRAATVLDSMKEESQKAAGKPSTSTLASSSDRAAPQRGSPKKPASPPSSKKTFQRPST
                     KKKSRMWSPGPQGKRKQSQATRKSPGRSHP"
     polyA_site      2699
                     /gene="Hhipl2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcaggccaac ccaggaagga gcagcagaaa atccccaagg tccaaatgct gggaaaacat
       61 aggagcccac acactgtttc tggtcgtccg gcccaatggc tctctcctgg cattttctgc
      121 ctgggcctca cattcttgtt gggctgggtg ggcctgctgc agggacaccc ccagtgcctg
      181 gattatggtc cacctttccg tcctcctctg catctggagt tttgctctga ctacgactcc
      241 tttggctgct gcgatcggcg caaagaccgc cgcatcgctg ccaggtactg ggacatcatg
      301 aactactttg acctgaaggg ccacgaactg tgtggaggtt acatcaaaga catcctttgc
      361 caggagtgct ctccctatgc agcccacctc tacgatgccg agaaccccca gacaccactc
      421 cggaaccttc cgggcctctg ctctgactac tgctctgcct tccaccacaa ctgccactct
      481 gccatctcct tgctaaccaa cgaccgcggc ctccaggagt cccatggaaa agatggcgct
      541 cgcttctgcc acctcctcaa ccttcctgat gaggactact gcttccccaa tgtcctgagg
      601 aacgatcaac tcaaccgcaa cctgggagtg gtggctgagg accaccaggg ctgcctgcag
      661 ctctgcctgg ctgaggtggc caatgggttg aggaaccccg tgtccatggt ccatgctggg
      721 gacggcaccc accgcttctt tgttgctgag caggtaggag tggtgtgggt ctacctccct
      781 gatgggagcc gcctggaaca gccctttctg gatctcaaga gcatggtgct gaccacaccg
      841 tggatcgggg atgaaagagg cttcttgggc ctggcttttc accccaaatt ccgccacaac
      901 cgcaagttct atatttatta ttcatgcctg ggcaagagga aggtggagaa aatccggatc
      961 agtcagatga aggtttccct gtctgaccct aacaaagcgg accccaaatc agagagggtc
     1021 atcttggaga tagatgaacc agcctcaaac cacaatggtg gacagcttct ctttggcctg
     1081 gacggctatc tttacatatt cactggggat ggagggcagg ctggggatcc ctttggcaag
     1141 tttggaaatg ctcagaacaa aagttctctg ctggggaaag tgttaaggat tgatgtgaat
     1201 ggggcaggca tgtctgccca gcggtaccga gtgcccctgg acaatccctt tgtatctgag
     1261 cctggggccc accctgccgt ctatgcctac ggggtcagaa acatgtggcg ctgtgctgtg
     1321 gaccgaggag accccgtcac acgccagggc cgaggtcgga tattctgtgg ggatgtgggc
     1381 cagaacaagt tcgaagaagt tgatctgatc gttaaaggcg ggaactacgg ctggagggca
     1441 aaggaagggt ttgaatgtta tgacaaaaac ctttgtcata atgcttcctt ggacgacatt
     1501 ctgcccatct atgcctatgg ccatggggtg ggaaagtcag tcactggagg ttatgtctac
     1561 cgtgggtgtg aatcccccaa tctcaatggc ctctacatct tcggggactt catgagtggt
     1621 cgacttatgg ctttgcagga agataggaaa acccagaaat ggtcaaagcg agacatctgt
     1681 ctgggaaact cgtcctgcgc cttcccgggg ctgatcagcg cgtacagcaa gttcatcatc
     1741 tccttcgcag aagatgaagc cggggagctg tatttcctgg ccacctccta cccaagcgcc
     1801 tatgcaccac atggatctat ttacaagttt gtcgacccct caaggcgagc cccgccaggc
     1861 aagtgcaaat tgaagccagt gccggtgaga gccaagagta agaagatccg gttccggcca
     1921 cgcgcagcca cagtcttgga ctcgatgaag gaggaatcgc agaaagcagc tggaaaacca
     1981 tccacttcga ccttagcttc tagctcagac cgggctgcac ctcagagggg ctcccccaag
     2041 aagccagctt ctcccccaag cagcaagaaa acatttcaaa ggcctagtac caagaaaaaa
     2101 agcagaatgt ggtccccagg cccccagggc aagaggaagc agagtcaggc cacacggaag
     2161 tccccaggca gaagtcaccc atgacttctt ggtcagcttg gccgatgaga cctgagaaag
     2221 gagaatgctt cgctgatcgt atactgctgc tgctgctgct gctaagtctg ggtctgctgg
     2281 aaggctgcct ggaggtgggt cgggcagagc tcgattccag cgtgtgtggt ctttctcacc
     2341 ctgggaaatc ttgctgtcta ccgaagaagc atgagtctgg tctgtggctg aatttttgag
     2401 gagagaccac agcccgcagg accctgcacc tggcttatgg catgtgctag tgtgcacacc
     2461 tgcctggaat cccccctgac atcctttcta cctggggtca taaatgaccc cgggcttcct
     2521 ctcacccatc ctttgatctc agtgtttggc cacgggaaat ctagcatgtt tcagccagct
     2581 tgctttagca gctcattcct ctctcctgct gcctgtgtct ggcagaggac aagcaggctc
     2641 tgctgtgatc ctctggctat ttaggttcag ctaatgctaa taaacacaag tgcatccca
//
