LOCUS       XM_039091516            5872 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hedgehog acyltransferase (Hhat),
            transcript variant X3, mRNA.
ACCESSION   XM_039091516
VERSION     XM_039091516.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091516.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5872
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5872
                     /gene="Hhat"
                     /gene_synonym="RGD1311746"
                     /note="hedgehog acyltransferase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 5 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:289344"
                     /db_xref="RGD:1311746"
     CDS             202..1449
                     /gene="Hhat"
                     /gene_synonym="RGD1311746"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X3"
                     /protein_id="XP_038947444.1"
                     /db_xref="GeneID:289344"
                     /db_xref="RGD:1311746"
                     /translation="MAVSQLATLLTKKHRPWIIMIYGMWACWCVLGAPGVVMVLLHTT
                     IAFCVAQFRSMLLSWLCSLLLLSTLRLQSVEEVKRRWYKTESEYYLLQFTLTVRCLYY
                     TSFSLELCRQPPSAQRACFSFPWLLTYVFYYPVFHNGPILNFPEFFRQMQQPELSSLQ
                     HSLCILAKGLGRLLCWWWLAELMVHLMYMHALYSSIPLLESVSCWTLGGLALAQVLFF
                     YVKYLVLFGAPALLMRLDGLTPPPLPRCVSTMFSFTGMWRYFDVGLHNFLIRYVYIPL
                     GGSQHGLLGTLLSTAMTFAFVSYWHGSYEDLWCWAALNWLGVTVESGVRRLLQTPCVR
                     ETLARHLSPQARRRLHALLASCSTSMLILFNLVFLEGIQVGKTYWNRIFLQGWPWVTL
                     SVLGFLYCYSHVGIAWAQTYTVL"
ORIGIN      
        1 tccttttcac tgtttaggta atgggctaac ttcttggggt tccatcctag agaatccatg
       61 tccatgaaga ctctgagtta gaaggaaggt acatttggag gatgacagga agacagtcag
      121 gcagaggacc cgactgattt tgagtggaac ttctggctgg agtgggggaa gcagaggctg
      181 gtgtggctcc tccttggcca tatggctgtg tctcagttgg ccacactgct cacaaagaag
      241 catagaccct ggattatcat gatctatgga atgtgggcct gctggtgtgt gctgggggct
      301 ccgggcgtgg tcatggtcct tctccacacc accatcgcct tctgcgtggc tcagttccga
      361 tcaatgctcc tctcctggct gtgttctctg cttctactct ccaccctaag actgcaaagt
      421 gtggaggaag ttaagagaag gtggtacaag acagagagcg agtactacct gctgcagttc
      481 acgctcacag ttcgctgcct gtactacacc agcttcagcc tggagctgtg ccggcagcct
      541 ccgtccgccc agcgtgcctg cttttccttc ccgtggctgc tgacctatgt cttctattat
      601 cctgtcttcc acaacgggcc catccttaac ttcccggagt tcttcagaca gatgcagcag
      661 ccagagctca gctctctgca gcacagcctc tgcattctag ccaagggcct gggccgcctg
      721 ctgtgctggt ggtggctggc tgaattgatg gtacacctca tgtacatgca tgccctctac
      781 agcagcatcc ccctcctgga gagtgtttcc tgctggacct taggaggact ggcgctggct
      841 caggtgctct tcttctatgt gaagtacttg gtgctcttcg gtgccccggc tctgctcatg
      901 cgcctggacg gactcacacc accacccctt ccccgctgcg tgagcaccat gttcagcttc
      961 acagggatgt ggaggtattt tgatgttgga ctacacaatt tcttaatcag gtatgtgtat
     1021 atcccactgg gtgggtccca gcatggcctg ctggggacgc tgctttctac cgcgatgacg
     1081 tttgcgtttg tgagctactg gcacggcagc tatgaggacc tctggtgctg ggcagcgctc
     1141 aactggctgg gagtcactgt ggagagtggg gtccggaggc tgctacagac accctgtgtc
     1201 cgggagactt tggcccggca cctctcccca caagctcgcc gtcgactaca cgctctgctg
     1261 gcctcctgct ctacctccat gctgatcctc ttcaacctgg tgttcctcga gggaattcaa
     1321 gttggaaaaa cctactggaa caggatcttc ctgcaagggt ggccatgggt gaccctgtct
     1381 gtcctgggat tcctgtactg ctattcacac gtgggcattg cctgggctca gacatacaca
     1441 gttctttaac tgtgtggctg ctgggccagg acagcctcca agggacatag catttcatcc
     1501 cgacctctca ctctgagacc atccccaaaa gactaccttc tactccagga ccatctccaa
     1561 ggaaccaccc tacactgaga ccatccctga agaaccacct tccaatctcc agtccctaag
     1621 ggaccatctt atactccaag gcaatccctg agaaaccaac ttctactccc ggtgcaatct
     1681 ctgagggacc acctttcact ccaggacagt ccctgaggga ctgccttcca ctcatcttct
     1741 gctgacgata cttcattcca agactggcag cttggtctat catagtacat atacaacccc
     1801 aaaatcttct agctttggag cctcaaagtg tttttttttt taataacccc ataagcttcc
     1861 tgatgcataa gttacagccc agagcagtct caggtctttc ccacgatacc tgtgacattt
     1921 gttttagaac ctcccttaga catgtttggg ttgttttttc cttctctacc aaagattcag
     1981 tatggcagac atgtgttttg acatggaagt cctggttaga gataggcctg ccatccctgg
     2041 gatgcctttt ggggaaattt ctgtgatact ttgacgaccc ctttctatgt gctgcactgg
     2101 aggctctgga ctaaccttct catgaatgat cctcagatgg ggggaacagc aaaaccatat
     2161 ttcacgtttc aagtgaccta gctagagtgg gtgatgtaca gctggggcat tccaaagagt
     2221 tctgtaattt gaactttttt ggactccacg catggctgct gatttctgag accttttgtc
     2281 atgaagagac atggtcattt ctctcacaga tgttctgcac agaagtggag tttaaaagcc
     2341 agagaatagg gtgtccacag gtgtactggg caaggcctca ggggacagtg gcatctcagg
     2401 gtcctgtgtg ttttactcag tgggttttat tgccttagtg tctctctctc tctctctctc
     2461 tctctctctc tctctctctc tctctctctt ttaaagcaga accctttttg ctacatagat
     2521 aattctgatt ttttttctag gcttattttg gatttttttt ttttttttgg ttcttttttt
     2581 cggagctggg gaccgaaccc agggccttgt gcttcctagg taagcgctct accactgagc
     2641 taaatcccca gcccctattt tggatatttt taaataaaaa ttttgagatc taaacacaag
     2701 tgtcttgata cttcatccct ctagacagat gctggacagc tgctgacaag tgtcactgtg
     2761 gttctgtgtg gctatgggtt catgggggag gggagagaag gagctttaag ctctgaagct
     2821 ctctgtgtgg tatttggagt gaatgattaa cacaactata tgaatttttt gactatgtga
     2881 caatcaagtg aaagatcaac tgggcgttgt gtcccgaatc attcctggga atgtcagctc
     2941 aatggaaaat gcaccctcat attgcaaacc ccgccattag gcagatcccc tttcttctta
     3001 gctgccgtgc ttgcaagaga gaggttgatg gcctgggatg ggcacactgt gctccctgaa
     3061 caaagcacaa gccagaaaga ggcaggtaag ctggacatta gtaacctcag cagctggcct
     3121 ggtaatcaga gggacacagg gcaggcaact gtggggtgct gggaagttca aagcatgtgg
     3181 gggggccatc actgaaatgg gtgtgggttc ctgggtcaac agagtaagta tttgtggtca
     3241 gccagaggga atctggctga agccttcaag taagaatgac tgtagggaac tgtctaacga
     3301 ggggcatctg taaataagcc atttgtagaa gggcaaacct acccatgagt ctacactgga
     3361 agagccggtg agtggttggc cataacaatc ctgaagttca ttaaaccgat ctgtttcagt
     3421 cacggtctca gcagctagtg gatattggct gttagccctc tgtatggatt atccagggct
     3481 ctgttgtccc acctttccct gctcctcaat gtaaatgata gggcagcatc ttcctctgca
     3541 gtccccattc gctgtagatg gacccttgat tctggattct ggtcgatcac cccatccacc
     3601 aggacaactc ccaggacagt tatggaagca cactggatga ggtccggagt cactgccagc
     3661 cccaggaccc tctgacccct gacctgggtc catgagcaac taggcaaccg cgcagccagt
     3721 acccgaggaa ggaggcagga tgcccaatgc caaccaaagt cctgctgtca tcacagtgac
     3781 atcttggagc cacacaggat gctgaattgg ccttatgttt gcaagttgtg tgagaacatg
     3841 ggctttgtcc tctagaggat gatggcctag agagcaaatt gcttatacct gtaggatcta
     3901 gctgttagca agtgtatgcg gtagcggtgg tggagctccc cttacagaaa ttgagatttt
     3961 ttttctttgc tttcctaaaa tacgactttt ggttggctaa gtactagaag ttaatgataa
     4021 tgtttatact tctagcaaac atatcaggat gtatgtatgc aatagggttg aatgccactt
     4081 gctacctcaa aggcagtatg agctagtttt atctctgttt ctagtctact tgattactta
     4141 caaatatccc atgtgtgggt ttgtctcttt gttttaacca ttaaagatta aagacatggt
     4201 taatgctcag ccctttatta gtgacgcctt tgaaatgagc actagttgtt tgggaattca
     4261 aacaatgcca ttagtattgc cgtgcccttc tgtaaagtaa tgacataggg gctgaaggga
     4321 tgtccttaaa aacaccatgt gcttgttgtg tggctagcga tgtttccacg tcctgacttt
     4381 gtcttcacat aatggatctc atctcagaat taagttcctc tgtctgcagg agagaagtgt
     4441 ttttggtcac aagatggccg tcctgggaag tctgactcag cacctgtggg ataacactga
     4501 gttggactgc atgaggcaag caggcctctg cctcaatagc tctgggaact gagggaagca
     4561 gggtgagaac ccagtgctgc tgacagtcat tcagggagtg ctgggacggt tttcaaaagt
     4621 ggggaaaaac atgaatatat tttattcgaa ctccatgtca agtggttcaa gctgaaagcc
     4681 atcactttta aacgggaggt ggacctaaga ggagtgttaa aggcaaatgc tatgaggtga
     4741 aggtgggtca tcaactctca cacactgtaa cttgatgcca ttgtgatggg aggcagggcc
     4801 tttgttgtgg tttggctgtg acggacctgg atctttaaga ccgagatctt aaaggcatcc
     4861 tctcatgttc atggcagaac ttcctgagag aacaaggttg ccccactttg ccctggatca
     4921 ctctgtgaac agcacttgga catgatgtat gctgtctcta caacttcata tttctcccca
     4981 gtctgttgta ggttcatatt ggctgtcaac ttgacagaat ctaggattac cgccgaagac
     5041 agatctctgg gcccgtctct gagggattgc tagatcagga aggcccagcc tgagtgtggg
     5101 tggcaccatt gcctgggtca agatgctaaa cagcataaag ggggcggggc caggacaggg
     5161 aaagggagag agctgagctc cagcttccac ctctctctgc ttccagagga tgctgtagga
     5221 catgtgacca gctgcctcat ggttctgctg ccatgatttc cctgccctgg tgggtgcact
     5281 gcaccctcaa gccatgagct aaaataaatc ctctcggaga gttgctttgt ctggtatttt
     5341 accacagcga tgtgaaaact gactaatgtg aggcacggtc cacatcaggg cttcccatat
     5401 aatttctttt taaagattga ttgttacatt ttgcatgcta tgtgtgtgta gatggctccg
     5461 agggccagaa agagggtatt gggtcacctg gagctggagt tccaggtggt tgtaagccag
     5521 ccactcttgt aggctgtggg aaccgagcag agaacagctg gaagaaaaga aaacacctca
     5581 ctgaatgacg taagtaagca aaggcaaaca caagtatcac gtataaaata gtttattacc
     5641 ataataaata aaattaaact ttttttttac aaatatcatt tgtgcttgtt taaaaatgtc
     5701 aagaaaaggg ggtatcatcc gtggagtgcc cacatgttct ccacatccac acagccacac
     5761 aggggagctc ttggcagcat cctcggctga ccacaaaaat agccttggtt ccttctcact
     5821 tgtttattca tgctcattcg gacagaggga aaagaaacaa acaaaaaaaa aa
//
