LOCUS       NM_001007707            2288 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus HGH1 homolog (Hgh1), mRNA.
ACCESSION   NM_001007707 XM_235449
VERSION     NM_001007707.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079158.1.
            
            On Nov 29, 2004 this sequence version replaced XM_235449.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079158.1, SRR8487230.8748.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..2288
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /note="HGH1 homolog"
                     /db_xref="GeneID:315094"
                     /db_xref="RGD:1359226"
     exon            1..690
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..1258
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /note="brain protein 16; protein FAM203A; family with
                     sequence similarity 203, member A"
                     /codon_start=1
                     /product="protein HGH1 homolog"
                     /protein_id="NP_001007708.1"
                     /db_xref="GeneID:315094"
                     /db_xref="RGD:1359226"
                     /translation="MRGPGVGSGLSGERGLSGKEAGADTEVAELLPFLVPGARADLQA
                     AAAQHVLALTGVGSGRTLLAGQTALLRALIDLAVAPIPAPSRDASRALVNLAADPDLH
                     WQMLAADPELPVRLLRCVLDPQWPWAEELAAVLANLSREPAPCAVLTEKLVAAEPERL
                     GLERLVSALCMPSYNASAPLHYLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYT
                     DSSVRRGGVVGTLRNCCFEHRHHKWLLGPQVDILPFLLLPLAGPEEFSEEEMEELPVD
                     LQYLSPDKQREPDADIRKMLIEAIMLLTATAPGRKQVRDQGAYLILRELYAWESEPDV
                     RMACEKLIQVLIGDEPEVGMENLLEVQVPEDVERQLQELDQQEQQELAQERRDKGAPR
                     T"
     exon            691..791
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /inference="alignment:Splign:2.1.0"
     exon            792..890
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /inference="alignment:Splign:2.1.0"
     exon            891..982
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /inference="alignment:Splign:2.1.0"
     exon            983..1105
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..2261
                     /gene="Hgh1"
                     /gene_synonym="Brp16; Fam203a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaagggtt ttaacgactt ccgctttccc ggcggtggcc cttgtgtagt gagaagcgac
       61 taaaactgct ggcggcatga ggggaccggg agtaggttcg gggctctccg gtgagcgagg
      121 gttgtcaggg aaggaggctg gcgcggacac ggaggtggcg gaactgctgc ccttcctggt
      181 tcccggagcg cgagcagacc tacaggcagc cgcggcgcag cacgtgctgg ctctgactgg
      241 tgtgggctcg ggccgcacgc tgttggctgg acagacagcg ttgttgcggg ctttgatcga
      301 cctagcggtg gccccgatcc cagctccttc ccgcgatgcc tcccgtgcgc tggtgaactt
      361 ggctgctgat ccggatctgc actggcagat gctggcggcg gacccggagc tgcctgtccg
      421 cctgctgcgc tgcgtgttgg accctcagtg gccctgggct gaagagttgg ctgcagtgct
      481 ggccaacctg agtcgcgagc cggctccgtg tgctgtgtta acggagaagc tggtggccgc
      541 tgagcccgag cgactgggtc tggagcggct tgtcagcgcg ctgtgcatgc ccagttacaa
      601 cgcgtccgca cccctgcatt acctggggcc gttgctctcc aaccttagcc agcaggcgga
      661 ggtgcgtgct tttctcctgg acccggacag gtgtgtggtc caacggctat tgccacttac
      721 ccagtacaca gactcctcgg tgcgcagggg cggggtggtg ggaacacttc ggaattgctg
      781 tttcgaacat cgacaccaca agtggttact cgggccccaa gtcgacattc tccccttctt
      841 gctactgccc ttggctgggc ctgaagagtt ttccgaggaa gagatggagg agctgcccgt
      901 tgacctgcag tacctatcac cggacaagca gcgagagccg gatgctgaca tccgaaagat
      961 gcttatcgaa gccatcatgc tgctgacagc caccgcacct ggtcggaagc aggtacggga
     1021 tcagggtgct tacttgatcc ttcgagagtt atatgcctgg gagtcagagc ctgatgtgcg
     1081 aatggcttgt gagaagctta tccaggtgct tattggggat gagccagagg ttggcatgga
     1141 aaacctgctg gaggtgcagg tacctgaaga tgtggaacga cagctccaag agctagacca
     1201 gcaagaacag caagagcttg ctcaagagcg aagagacaag ggtgccccac ggacctgaag
     1261 cccctttggc ccacctttgc cagggttccc acagggttct agggtaaatg cccagtaagt
     1321 gttgagaagc tcgaggataa tacagcccaa tcccgtgccc tgttgcaacc agcactaatg
     1381 tgtgctgttc agagctgcac tctggaggtg gagccagcca ggtcctgtat cacagctgcc
     1441 tacagatgag gcaggatgcc catcgtcact ggaactatga ggagcctgtt cccagactga
     1501 taggactgga ctgaaaacac tgcgagccct gggaagccaa ctagtttttc attcctgcag
     1561 gcactgaagg gtctagacgt ggttaggctt agagatataa acagtgctgt gagcagtcct
     1621 ttggagtcct tttgctctcc ttgcccaaga ccttgaaagc agactacact cggatcccag
     1681 ggtcttccta gaatgctctg cccttctagg cctgtctttg gatcgcttgc tgggtatcgt
     1741 tgcccattct atctcttatt tctctgcttc atctgtcagc ctcctcagtc tcaggctgaa
     1801 ttgggactca gcccttcaaa tagaacctac tcctcggtta acctcttcaa gcctcagttg
     1861 cctttcaaga catccaaacc ctcctgttgg acacatctct gcagagattc tcctgcatgt
     1921 tcttccagca ttcatgatcc taccctcaac atctggagcc tactccgtgt atgcaccctg
     1981 tctttctaat tctgtagata ccatgcccta ctgcatcccc ttttctgagc cacagatctg
     2041 ctccacctgt gtgtgctgtt ttcctcagga agaggtcctt ccaggtcccc gacacctgta
     2101 gtcttcatgg gagtttgcag tgttccagct tcagaggaag gctggtgtag tgttatcatt
     2161 gcatggctag gtgttttcat tgaataccag gagtcttctc ccctctcccc caatgatgct
     2221 ctccagaact cttgttaaag ctttgacgct attgacacac aaaaaaaaaa aaaaaaaaaa
     2281 aaaaaaaa
//
