LOCUS       NM_001024988            2756 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus HERPUD family member 2 (Herpud2), mRNA.
ACCESSION   NM_001024988 XM_006242723 XM_217098
VERSION     NM_001024988.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2756)
  AUTHORS   Pang,A.L., Taylor,H.C., Johnson,W., Alexander,S., Chen,Y., Su,Y.A.,
            Li,X., Ravindranath,N., Dym,M., Rennert,O.M. and Chan,W.Y.
  TITLE     Identification of differentially expressed genes in mouse
            spermatogenesis
  JOURNAL   J Androl 24 (6), 899-911 (2003)
   PUBMED   14581517
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Jan 14, 2022 this sequence version replaced
            XM_006242723.3, NM_001024988.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.30443.1,
                                           SRR26643298.43240.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-990               JAXUCZ010000008.1  31893230-31894219   c
            991-1068            JAXUCZ010000008.1  31876836-31876913   c
            1069-1182           JAXUCZ010000008.1  31874229-31874342   c
            1183-1334           JAXUCZ010000008.1  31872751-31872902   c
            1335-1457           JAXUCZ010000008.1  31853688-31853810   c
            1458-1775           JAXUCZ010000008.1  31851335-31851652   c
            1776-1890           JAXUCZ010000008.1  31850540-31850654   c
            1891-2756           JAXUCZ010000008.1  31849216-31850081   c
FEATURES             Location/Qualifiers
     source          1..2756
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..2756
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /note="HERPUD family member 2"
                     /db_xref="GeneID:300463"
                     /db_xref="RGD:1307343"
     exon            1..990
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     CDS             844..2052
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /codon_start=1
                     /product="homocysteine-responsive endoplasmic
                     reticulum-resident ubiquitin-like domain member 2 protein"
                     /protein_id="NP_001020159.2"
                     /db_xref="GeneID:300463"
                     /db_xref="RGD:1307343"
                     /translation="MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNV
                     YPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCASRSPPSSPKSSTDGE
                     SHGALASSTNSNSDHSDSTTPSPSQESLSLVAGSSEGLRHRTLPQAQTDPAQSHQFPY
                     VIQGNVDHQFPGQGVPPGFPMYPAFSPLQMLWWQQMYAQQYYMQYQAAVTAQATSSAS
                     SAQHAASSPLNLAHVPGEEPPPAPNLVAQENGPENVQMNAQGGPVLNEEDFNRDWLDW
                     VYTFSRAAVLLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQAPNNVDA
                     NNEGQNANNLELEEMERLMDDGLEDESGEDAGEDASAAQRPGLMASAWSFITTFFTSL
                     IPEGPPQVAN"
     exon            991..1068
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1182
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1334
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1457
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     exon            1458..1775
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1890
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
     exon            1891..2756
                     /gene="Herpud2"
                     /gene_synonym="RGD1307343"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacaatctcg ggcgctcgcg cggcgccgcg ggcctgtccc cgccctcctc ctgcctgcca
       61 cctgccgccc ggccgcgcct gcggggactg cctagccgca gtcaggaggg ccggccgccg
      121 tagcccacag tcaccgcgcc gccccgcgag accaggaggg cgagcgccgc ggagcaggaa
      181 gggagcggcc cgcggaggcg cggcgctggg ccggccttcc tcccctcagg ctcgctccgc
      241 tctgagccgc aggcttgctt tcctcaggct cgctctcggc cgcggccttc ttttccttta
      301 ggctcgctcc tcggtcgcgg ccttgcttgt ctcaggcttg ctctccggcc gccgtcattt
      361 tcttcaagct cgctctgcgg ctgttgccac ccccttccag gctcgctccc cgccaccgcc
      421 ttcctcctcc caggctcgct ctccggccgc cgcccctcag ccgcccaggc tgcgcgggtg
      481 ctcgcgtggg gccttgttgc gtttcagctc gggggtcgcc gcaggggcgg ggcgctgagc
      541 ggtccgccgc ggcctcccct tcgcgtcctc cccaggtcgt ctgcccgcct tcctccgcag
      601 tccggagcct ggcggagccc agacctggcg gggacagctg cgcacccggc ccggcaccca
      661 gagcctgccg ccaccaccgc caccgtccat cgttggtacc ggcaatggcc ttcgtatcgc
      721 ccgatgtgct tgtgactgat ttggacctgg aattttgaga actcacttct gtccccatcc
      781 cagccgtgcc cgcccactgg gcttagcagc cgcgccgcta gactgtccga ctttgggagc
      841 accatggacc aaagtgggat ggagattcct gttactctca tcattaaagc accgaatcag
      901 aaatacagtg accagactat tagctgcttc ttgaactgga ccgtggggaa actaaaaacg
      961 catctatcta acgtgtaccc tagcaaacca ttgacaaaag accagaggtt ggtgtattct
     1021 ggcagactac ttcctgacca tctgcagctg aaagacattc tcagaaaaca agatgagtat
     1081 catatggttc atctagtctg tgcttctcgg agtcctccca gttctccaaa atccagcacc
     1141 gatggagaaa gtcacggagc actggcatcc agcaccaatt ctaattcaga tcattctgat
     1201 tcaaccactc catcacccag tcaagagagt ttgtcactag ttgctggttc ttcagaagga
     1261 ttgaggcacc gtactcttcc acaagcacag actgacccag cccagagtca tcagtttcca
     1321 tatgtaatcc aaggaaatgt ggatcaccag tttcctgggc aaggcgtgcc ccctgggttc
     1381 ccaatgtacc ctgcgttcag ccccctgcag atgctgtggt ggcaacagat gtacgctcag
     1441 cagtattata tgcaatatca agctgcagtt acagctcagg ccacgtcaag tgccagctca
     1501 gcccagcatg ctgcatcgtc acctctgaat ttggcccatg ttcctggaga agagccccca
     1561 ccagctccca acctagtggc ccaagaaaat gggcctgaga atgttcaaat gaatgcacag
     1621 ggcggcccag tgctaaatga agaagacttc aaccgcgact ggctggactg ggtgtacacg
     1681 ttctcgcgag ctgccgtcct cctcagcatc gtatacttct actcttcctt tagtcggttt
     1741 atcatggtaa tgggagccat gctgctggtt tatttacacc aagctggatg gtttcctttc
     1801 aggcaagaag gcggtcaaca acaggctccc aacaatgttg acgctaacaa cgaggggcag
     1861 aatgcaaaca acctagaact tgaagaaatg gagcgcctta tggatgatgg actcgaagat
     1921 gagagtggag aagatgcagg tgaagatgcc agtgcagctc aaaggcctgg gctaatggct
     1981 tccgcttggt cttttatcac cacctttttt acttcactga taccagaggg gcctccccaa
     2041 gttgccaatt agacctgaaa aactgtgcca gctgcaaagg agggtttgac tttaggaaag
     2101 tggtttaaat aacagtgcaa ttttaaaaaa aatgtataac tttttttttt gatgatcatg
     2161 tacagaggtc ttttctttaa gcttctcatg catatgaata ttttaagcac aaatggacta
     2221 ctaagcttgt ggtttctctt tgtttgttta aagatcctaa cagaacatag cctaacagta
     2281 ctggtcttcc agttttattc atttcaatta tgtgtagtgc gctgagcaga accactgtgt
     2341 gttacttctt taaagagctg ctacacttta aatgttcata gctagatggc cagcccttca
     2401 gtgtgtactt tgaataaata tatctatttt ctgtgaatta tcctgaaagt tttaaacaga
     2461 aatgacctca tagtttttaa taaagtttat ttacctaaaa tgtgctagta gcatcttgcc
     2521 cacccataaa gcaataaact tctcaaaaat attaattttg acatttgaat aaatgatgga
     2581 aactttctat tttaaggaca catgtcccat cagttggaat tagtacctta aaagaaaaaa
     2641 aggcagctct tcattggaat taagtgacac aaaatgtttg atatggcagt acttttataa
     2701 aatatgctgg aaattgctcc ctgtactttt ttaaataaaa agtcaattat gataaa
//
