LOCUS       XM_039082304            3244 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hepatic and glial cell adhesion
            molecule (Hepacam), mRNA.
ACCESSION   XM_039082304
VERSION     XM_039082304.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082304.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3244
                     /gene="Hepacam"
                     /note="hepatic and glial cell adhesion molecule; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 9 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 58 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:300517"
                     /db_xref="RGD:1306811"
     CDS             149..1405
                     /gene="Hepacam"
                     /codon_start=1
                     /product="hepatic and glial cell adhesion molecule"
                     /protein_id="XP_038938232.1"
                     /db_xref="GeneID:300517"
                     /db_xref="RGD:1306811"
                     /translation="MKREREALSRASRALRLSPFVYLLLIQPVPLEGVNITSPVRLIH
                     GTVGKSALLSVQYSSTSSDKPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLF
                     ENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLEL
                     SEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCV
                     VENPISQVRSLPVKITVYRRSSLYIILSTGGIFLLVTLVTVCACWKPSKKSRKKRKLE
                     KQNSLEYMDQNDDRLKSEADTLPRSGEQERKNPMALYILKDKDSSEPDENPATEPRST
                     TEPGPPGYSVSPPVPGRSPGLPIRSARRYPRSPARSPATGRTHTSPPRAPSSPGRSRS
                     SSRSLRTAGVHRIREQDEAGQVEISA"
ORIGIN      
        1 gccagcaaca cacagagctc tgtgtattca gagggaagtt ggcagggttg tgcccgggca
       61 gagaaactcc gagtggtaca aagggacgtg cccggagtgg agaaatcatg ctaattgtct
      121 gcaccagagc tggagaacgc cacccaaaat gaagagagaa agggaagccc tgtcaagagc
      181 ctccagggcc ctgcgcctct ctccttttgt ctacctgctt ctcatccaac cagtccccct
      241 ggagggggtg aacatcacca gcccagtacg tctgatccac ggcacagtgg ggaagtcggc
      301 cctgctttct gtgcaataca gtagcaccag cagcgacaag cccgtggtga agtggcagct
      361 gaagcgtgac aagccagtga ccgtggtgca gtctataggc acagaggtca ttggcactct
      421 gcggcctgac tatcgagacc gtatccggct ctttgaaaat ggctccttgc ttctcagcga
      481 cctgcagttg gcggacgaag gaacctatga agtggagatc tccatcactg acgatacctt
      541 cactggagag aagaccatca acctcactgt ggatgtgccc atttcaaggc cacaggtgtt
      601 agtggcttcg accactgtgc tggagctcag cgaggccttc accctcaact gctcccacga
      661 gaacggcacc aagcctagct acacctggct gaaggatggc aagcccctcc tcaatgactc
      721 ccgaatgctc ctgtcccctg accaaaaggt gctcaccatc acccgagtac tcatggaaga
      781 tgatgacctg tacagctgtg tggtggagaa ccctatcagc caggtccgca gcttgcccgt
      841 caagatcacc gtgtatagaa gaagctccct ctatatcatc ttgtctacag gaggcatctt
      901 cctccttgtg accctggtca cagtctgtgc ctgctggaaa ccctcaaaga agtctaggaa
      961 gaagagaaag ttggagaagc aaaactcctt ggaatacatg gatcagaatg atgaccgcct
     1021 caaatcagaa gcagacaccc taccccgaag tggagaacag gagcggaaga atccaatggc
     1081 gctctatatc ctgaaggaca aggactcctc agagccggat gagaatcccg ctacagagcc
     1141 acgaagcacc acagaacccg gcccgcctgg ctactccgtg tcgccgcccg tcccaggacg
     1201 ctctccgggg ctccccatcc gctcagcccg ccgctacccg cgctctccag cgcgctcccc
     1261 cgccacgggc cggacgcaca cgtcgccacc gcgggccccg agctcgcccg gccgctcacg
     1321 cagctcctcg cgctcactgc ggactgctgg cgtgcacaga atccgggagc aggacgaggc
     1381 tgggcaggtg gaaatcagtg cctgagcctc ctcgggaacc ctctgcggtt gcccacggtc
     1441 tgctctccgc ggccgggggg aggctgagaa gtcccggtgc ctctggccag gggtgagggg
     1501 agatcaggcc tgatccccgt ttaggatgca tgacgtgtgt gaacttgcac aaatgggtgg
     1561 agcgctgatc ttggtgttaa acccggttgc atgtgcgctg ggtttactgg ctgtgttctc
     1621 tgactgtgtt ctcagtgggt atgagctgtg ccctcttagg actacataga ttattaaatt
     1681 tctggcccaa tcccctaaag gattttatgg aaactaacag taattttacc cagtgagccg
     1741 atcctatgcg ccccctggaa gcgtttatgc ttccaaacca cctcccaatc ccacatgcct
     1801 ccgatcccta aagtctgtgg tagtttttcc cttagcccaa tttagaggcc acttaccccc
     1861 aaacgcacac taaaactaaa gacaagactg atggtggttc ctgcgtatac agggcctgtt
     1921 ctgattacaa aggagtcgtt gtcttaagga cctattctgg acacctgctt ccccatctct
     1981 ccaggtgatg agagagaatc ccgggtgcat tcctgagacc cttggaaccc gggacaaggc
     2041 aaggacaaaa tttcaagctc acagtgcttg gtggcctcca atggtctccc caaaagtgtg
     2101 ccgtactggt ctttcttcct gtcagttttc atgagaatgt gggtggactt gttcctagag
     2161 acttgcacgc ccactcaccc ctgacctagc aagctgtccc tgacaaggat ctggttttga
     2221 ccattcatgc ccttcttccc ggctgttgtt ttaagaaaca aacttccaat catccccagg
     2281 aaggttgaga agcttccttg agctgtaaga aaaataagat tctactcccc agggagacat
     2341 gaaaagagaa agaagcttta catgccccga catgtcaaag caatgacggc ccacccccta
     2401 gcctcctgct cccctcctgc cttgctctta gaggctcaga acccagggca atggacagag
     2461 ccagctccct aatccgtact ccagtcggaa gacaaaacgg actgggccgc tcccaagcca
     2521 tcacttcttt gggcattttg agaaaaggaa atgatgtact gtgtaaaaac agcacacgaa
     2581 taatagataa aagccaagaa gactccgggt gttctgccct ctcttcccta atgcccccag
     2641 ggacccttgc atcgcttgtc cctcaactcc taaccctcat ctttgcttct gcatcatctc
     2701 atgaacaagg ccctgtatcc ttcacctcca catcagaata cacttccccc cagccctgca
     2761 ggcaccaaga tttctagttt gcctgcatcc cctcacccaa gcagcacgac tctctctccc
     2821 ccatcctgat ggtctacctg ctcctgtgtc aggcgcgttt gcagctctcc ttccttagcc
     2881 agaacccaca gtccactaac cttcccaggt gcctcatcca cggtaaaata gtgcgtgtag
     2941 gtgacagtgc aggcagccta ggagatgtaa gatgcagagg gctacctgtt gctcagcctt
     3001 gaggtacagg ggtgagggat agggtgcacg agagcatgcc acaccctggt gctgaatccc
     3061 ggccgggctg gcttcccaga ctcaagccaa gtttgcctta aatcgggggt aagtaaggca
     3121 gtggtttttt ttttttttta atttttgttt tgctttgttt tgatcttcat ctttgtattc
     3181 acttagcatc tagccgagtg catagcacaa cctggatgct caataaactt ttgatgaaat
     3241 gaaa
//
