LOCUS       NM_172039               4414 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus high density lipoprotein binding protein (Hdlbp),
            mRNA.
ACCESSION   NM_172039
VERSION     NM_172039.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4414)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4414)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 4414)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 4414)
  AUTHORS   Moser,K. and White,F.M.
  TITLE     Phosphoproteomic analysis of rat liver by high capacity IMAC and
            LC-MS/MS
  JOURNAL   J Proteome Res 5 (1), 98-104 (2006)
   PUBMED   16396499
REFERENCE   5  (bases 1 to 4414)
  AUTHORS   Chen,Z. and Menon,K.M.
  TITLE     Expression of high density lipoprotein-binding protein messenger
            ribonucleic acid in the rat ovary and its regulation by
            gonadotropin
  JOURNAL   Endocrinology 134 (6), 2360-2366 (1994)
   PUBMED   7514997
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC105748.1.
            
            [WARNING] On Aug 5, 2024 this sequence was replaced by NM_172039.3.
            
            On Dec 11, 2007 this sequence version replaced NM_172039.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC105748.1, U90725.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q36"
     gene            1..4414
                     /gene="Hdlbp"
                     /note="high density lipoprotein binding protein"
                     /db_xref="GeneID:64474"
                     /db_xref="RGD:620962"
     exon            1..74
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            75..139
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            140..252
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     CDS             177..3983
                     /gene="Hdlbp"
                     /note="HDL-binding protein; lipoprotein-binding protein"
                     /codon_start=1
                     /product="vigilin"
                     /protein_id="NP_742036.2"
                     /db_xref="GeneID:64474"
                     /db_xref="RGD:620962"
                     /translation="MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAF
                     PPLPEKAACLESAQEPAGAWSNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAK
                     ICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVPIPKE
                     HHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAE
                     QDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQ
                     LAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPS
                     DSISETVILRGEPEKLGQALTEVYAKANSFTVSSVSAPSWLHRFIIGKKGQNLAKITQ
                     QMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHL
                     IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENER
                     TKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSEIVQLRGPKNEVEKC
                     TKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNS
                     ETIVITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEE
                     CGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHK
                     FLIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLD
                     NVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCV
                     EAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRIQQITRDYNVQIKFPDREE
                     NPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIVISGRKEKCEAAKEALEALVP
                     VTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAITGLAANLDRA
                     KAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF
                     PDKDDGNQPQDQITITGYEKNTEAARDAILKIVGELEQMVSEDVPLDHRVHARIIGAR
                     GKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADVVDS
                     EALQVYMKPPAHEESKAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPKTL
                     PWGPKR"
     exon            253..410
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            411..626
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            627..833
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            834..1049
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1256
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1364
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1365..1469
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1470..1548
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1688
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1689..1793
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1907
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1908..1994
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1995..2126
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            2127..2345
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            2346..2567
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            2568..2786
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            2787..2925
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            2926..3080
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3081..3185
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3186..3320
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3321..3464
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3465..3650
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3651..3767
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3768..3896
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            3897..4390
                     /gene="Hdlbp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgtcttgt tcctgtttcg ccacagttcc taccttatga gcttggattc ctcacgctaa
       61 taaaagagga gcagtaaaag ctggcaggct gacagaggca acctcaggac ggactttctg
      121 gctactgacc attttgctgt gtcttactag gattgtgtgt ggacgtgaga tcaaccatga
      181 gctccgttgc agttttgacc caagagagtt ttgctgaaca tcgaagtggg ctggttccac
      241 aacaaatcaa agttgccaca ttaaattcag aagaggaaag tgaccctcca acctacaagg
      301 atgccttccc tccactgcct gagaaagcag cttgcttgga aagtgcccaa gaacctgctg
      361 gagcctggag taacaagatc cggcccatca aggcctctgt catcactcag gtgtttcatg
      421 tacccctgga ggagagaaaa tataaggaca tgaaccagtt tggagaaggt gaacaagcaa
      481 aaatctgcct tgagatcatg caaaggactg gtgctcacct ggagctctct ctggctaaag
      541 accaaggtct ctccatcatg gtctcaggga agctggatgc agtcatgaaa gcccggaaag
      601 acattgttgc tagactacag acacaggcct cagccactgt tcccattcct aaagagcacc
      661 accgctttgt tattggcaaa aacggagaaa aactacaaga cttagaactg aaaactgcaa
      721 ccaaaatcca gatcccacgc ccagatgacc ccagtaatca gatcaagatc actggcacca
      781 aagaaggcat cgagaaagct cgccatgagg tccttctgat ctctgctgag caggacaagc
      841 gtgccgtaga gaggctagaa gtggagaagg ccttccaccc cttcatcgct gggccgtaca
      901 atagacttgt gggtgaaatc atgcaggaga cagggacgcg aatcaacatc cctccaccca
      961 gtgttaaccg tacagaaatc gtcttcactg gagagaagga acagctggct caggctgtgg
     1021 ctcgtattaa gaagatttat gaggaaaaga agaagaagac tacgaccatt gcggtagagg
     1081 tgaagaaatc tcagcacaag tatgtcatcg ggccgaaggg caactcactg caagagatcc
     1141 tggaaagaac tggagtctcc gttgagatcc cgccctcaga cagcatctcc gagactgtga
     1201 tacttagagg cgagcctgaa aagctgggac aggcattgac tgaagtctat gccaaggcca
     1261 acagttttac agtctcctca gtctctgccc cttcctggct tcaccgtttc atcattggta
     1321 agaaagggca gaacctggcc aaaatcactc agcaaatgcc aaaggttcac attgagttca
     1381 cagaaggtga ggacaagatc accctggagg gccccacaga agatgtgaat gtagcccagg
     1441 aacagattga aggaatggtc aaagacctga ttaatcggat ggactatgta gagatcaaca
     1501 ttgaccataa attccacaga cacctcattg ggaagagtgg agccaacatc aacagaatca
     1561 aagaccagta caaagtgtct gtgcgcatcc cccctgacag cgagaagagt aacctgatcc
     1621 gaattgaggg agacccacaa ggtgtgcaac aggccaagcg ggagctgctg gagcttgctt
     1681 ctcgcatgga aaatgagcgc accaaggatc taatcattga gcaaagattt catcgcacaa
     1741 tcattgggca gaaaggtgaa cggattcgag aaattcgtga caaattccca gaggtgatca
     1801 tcaactttcc ggatccagca caaaagagtg agattgttca actcagaggc cccaagaatg
     1861 aggtggagaa atgtaccaag tacatgcaga aaatggttgc agacctggtg gaaaatagct
     1921 attcaatttc tgtaccgatc ttcaaacagt ttcacaagaa tatcattggg aaaggaggtg
     1981 caaacattaa aaagattcgt gaagagagca acaccaagat tgaccttcct gccgagaaca
     2041 gcaactcgga gaccattgtc atcactggca agcgagccaa ctgtgaagcc gcccggagcc
     2101 ggatcctgtc catccagaaa gatctggcca acatagctga ggtggaggtc tcaatccctg
     2161 ccaaactaca caactctctc attggcacca agggtcgtct gatccgctcc atcatggagg
     2221 aatgtggtgg cgtccatatt cactttcctg tggaaggttc tggtagtgac actgttgtca
     2281 tcaggggtcc ttcctcagat gtggagaagg ccaagaagca gcttctgcac ctggctgagg
     2341 agaagcaaac caagagtttt actgtggaca tccgagccaa gccagaatac cacaaattcc
     2401 tcattggcaa agggggaggt aaaatccgca aggtgcgtga cagtactgga gcccgcatca
     2461 tatttccggc tgctgaggat aaggaccagg acctgataac aatcatagga aaggaagatg
     2521 ctgtccgtga ggcacaaaag gagctggaag cattgatcca gaacctggat aatgtggttg
     2581 aagactacat gctggtggac cccagacacc accgccattt tgttatccga agaggacagg
     2641 tattacgaga gattgctgaa gaatatggcg gggtgatggt cagcttccca cgctctggca
     2701 cacagagtga caaagtcact ctcaagggtg ccaaagactg tgtggaggca gccaagaagc
     2761 gaattcagga aatcattgag gatctggaag ctcaagtaac ggtggaatgt gctatacccc
     2821 agaagtttca tcgttcggtc atgggtccca aaggttcaag aatccagcag atcactcggg
     2881 actacaatgt tcaaattaag ttcccagaca gagaggaaaa cccagttcac agtgtagagc
     2941 cttccatcca ggagaatgga gatgaggctg gagagggcag agaggccaag gagaccgacc
     3001 cgggctctcc caggaggtgt gacatcatag ttatctctgg ccggaaagag aaatgtgagg
     3061 ctgccaagga agccctggag gcactggttc cagtcaccat cgaggtagag gtaccctttg
     3121 atcttcaccg ctacatcatt gggcagaaag gaagtggaat ccgcaagatg atggatgagt
     3181 ttgaggtgaa tatacatgtg ccagcccccg aactgcagtc acacaccatt gccatcactg
     3241 gccttgcagc aaatttggac agggctaagg cggggctact ggatcgagta aaggagctgc
     3301 aggctgagca ggaagatcgg gctttaagga gttttaagct gagtgtcact gtagacccca
     3361 aataccatcc caaaattatc gggagaaaag gggcagtgat cacacagatc cgattggaac
     3421 atgatgtgaa catccaattt cctgataagg acgatgggaa tcagccccag gaccaaatca
     3481 ccatcacagg gtatgagaag aacactgaag ctgcccgtga tgctatcctg aaaattgtgg
     3541 gtgagcttga gcagatggtt tctgaggatg ttcccttgga tcaccgtgtg catgcccgaa
     3601 tcattggtgc cagaggcaaa gccatccgga aaatcatgga tgagttcaag gtggacattc
     3661 gcttcccaca gagcggagct ccagacccta actgcgtcac tgtgacagga ctcccggaga
     3721 atgtggagga agctatcgac catatcctca acctagaaga ggaatatctg gctgatgtgg
     3781 tggacagtga ggcgctgcaa gtttacatga agcccccagc acatgaagag tccaaggcac
     3841 catccaaagg ctttgtggtg cgagatgctc cctggacctc caacagcagt gagaaggctc
     3901 ctgatatgag cagctctgaa gaattcccca gctttggggc tcaagtggcc cccaagaccc
     3961 tcccgtgggg ccccaaacga taatgatcaa aaagaaacct ttccagcctg ctgcccaaac
     4021 ccaaccacac aatggtttgt ctcaatctga ctcagcagct ggaccctcgt aaattgttga
     4081 tgctccccct ccccgaggtc tcgcagcaaa gcctggtggg ctggccttct gtggctgctt
     4141 ccccaggcct ggtcagcacc cgcaggctca gggtctgctc ctgacgctgt gctctgggaa
     4201 aggcacgcca ctgcgtgaaa cactaagcaa ggtaatcgag catttcgtga tcacagactc
     4261 cagcttcctg gtccacccag catgtagtca gcactctgac cttcacagca gagctccaca
     4321 gcggctagga gttgacttcc tgtgtcatga cctcaggaaa taaatttcct tgactttata
     4381 aaagccaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
