LOCUS       NM_001107884            1890 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus haloacid dehalogenase like hydrolase domain
            containing 5 (Hdhd5), mRNA.
ACCESSION   NM_001107884 XM_001058617 XM_232249
VERSION     NM_001107884.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_232249.4, XM_001058617.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1890
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /note="haloacid dehalogenase like hydrolase domain
                     containing 5"
                     /db_xref="GeneID:312680"
                     /db_xref="RGD:1306557"
     exon            1..140
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1274
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /note="cat eye syndrome chromosome region, candidate 5
                     homolog; cat eye syndrome critical region protein 5"
                     /codon_start=1
                     /product="haloacid dehalogenase-like hydrolase
                     domain-containing 5"
                     /protein_id="NP_001101354.1"
                     /db_xref="GeneID:312680"
                     /db_xref="RGD:1306557"
                     /translation="MAALARLGVLGPGRCLWKLPVRLSAEFQGYGPRRGYVADRAERS
                     PTFGLLFDIDGVLVRGHRVIPAALEAFSKLVNSQGQLQVPVVFVTNAGNILQRDKAQE
                     LSALLECKVDPDQVILSHSPMKLFLQYHNKRMLVSGQGPLVENARALGFQNVVTVDDL
                     RIAFPELDMVDLQRRPKTMRPRSDFPAIEGVLLLGEPVRWETNLQLITDVLLSNGHPG
                     AGLATAPYPHLPVLASNMDLLWMAEASMPRFGHGTFLLCLETIYRKITGHELKYEGLM
                     GKPSILTYRYAEEVIRQQAERRGWAAPIRKLYAIGDNPMSDVYGANLFHQYLQMANGG
                     EKEQRADGQEKQRPSAARSCASVLVCTGIYSSQDPGSQAPTPGRAELPFHGHRDFSFS
                     PELLEASHIVHDVNEAVQLVFHQEGWA"
     exon            141..344
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            345..457
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            458..551
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            552..582
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            583..757
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            758..946
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            947..1890
                     /gene="Hdhd5"
                     /gene_synonym="Cecr5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcgacgag cgcgatggct gcgctcgccc ggctgggggt tctcggcccc gggcgctgtc
       61 tgtggaagct gcctgtgcgc ctgtccgcgg agttccaggg ctacggaccc cggaggggct
      121 acgtcgcgga ccgcgctgag cgttctccca cctttggctt actgttcgac attgatggag
      181 tgctggtccg aggccacagg gtgatcccag ctgctctgga agcattcagc aagctggtaa
      241 actcccaggg gcagctgcag gtacctgtgg tttttgtcac aaatgctggg aacatcttac
      301 agcgtgacaa agcccaggag ctgtcagccc tgctggagtg caaggtggat ccagaccaag
      361 tcattctttc tcacagcccc atgaaactct tcttgcagta ccacaacaag cggatgctag
      421 tgtctgggca gggacccctg gtggaaaatg ccagagcact aggcttccag aatgtggtga
      481 cagtagatga tctgcgaata gccttcccag agctggacat ggtggacctt cagcggcggc
      541 cgaagaccat gcgcccgagg agtgacttcc ctgccattga aggggtcctc cttcttgggg
      601 agccagtccg ctgggagaca aacctgcagc tgattacaga tgtccttctt agcaatggac
      661 accctggagc tggcctggcg acagctccgt atccccacct tcctgttctg gccagcaaca
      721 tggatctcct gtggatggcc gaggccagca tgcccaggtt tggtcatggc actttcctgc
      781 tctgcctgga aaccatctac cggaaaatta caggccatga gctgaagtac gagggcctga
      841 tgggcaagcc cagcatcctc acttaccggt atgcagagga agtcatcagg cagcaggctg
      901 agaggcgggg ctgggccgcc cccatcagga agctgtatgc tataggtgat aaccctatgt
      961 ctgatgtcta cggggccaac ctgttccatc agtacctgca aatggcaaat ggtggagaga
     1021 aggagcaacg ggctgatgga caagagaagc agcggccttc agcagcccgg agctgtgctt
     1081 ccgtcctggt gtgcactggt atatacagtt ctcaggaccc aggctcccaa gcacctactc
     1141 ctggaagggc agagctccca ttccacgggc accgagactt cagcttcagt ccagagctcc
     1201 tagaggcctc ccacatcgtt catgatgtaa atgaagctgt gcagctggtt ttccaccagg
     1261 agggttgggc ttgagcgtaa ggagatgtag cagaggcgaa gggggccgtt ggaacatgca
     1321 cctcagggac tcctgtgtgc caggccgtct gtggtctggg ccacaggcat caagtctgag
     1381 cctggtctct tgccattact tcctgggaca aagaagacca cagcttcagt aactacagaa
     1441 tgccctttca gaggagggat gggtttctgg gcccttcctg tgcgtctctt gcagtctgac
     1501 ctcatgctgg tccctttacc tctgtgcctc agtgtcctct cagggaggac ctttttactt
     1561 ccagacaggg actcactatt gtagctccgg ctgtcctgga actcactgtg tagcccaggt
     1621 tgtcctgaaa ctcagatctg cctgcctctg cctccccggt gctgggatca aaggtgcacg
     1681 ccatcacacc tgcctcgtaa ggacttttaa gacagggcac agtgtaagac tgtgtggaaa
     1741 ctttggagag cctgtggttg cacggatggg agcactgcca gggaggggtg tgactaacac
     1801 tctcactagt gtttactgtg ttttagagtg ttgcccagaa gactttggga ctttttttta
     1861 aaaaaattaa aaactatcct aatatttgtt
//
