LOCUS       NM_001108460             944 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus HD domain containing 2 (Hddc2), mRNA.
ACCESSION   NM_001108460 XM_001057933 XM_341741
VERSION     NM_001108460.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 944)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474002.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_341741.3, XM_001057933.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BP500531.1, SRR8487227.23719.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p11"
     gene            1..944
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /note="HD domain containing 2"
                     /db_xref="GeneID:361462"
                     /db_xref="RGD:1307562"
     exon            1..107
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..638
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /EC_number="3.1.3.89"
                     /note="HD domain-containing protein 2"
                     /codon_start=1
                     /product="5'-deoxynucleotidase HDDC2"
                     /protein_id="NP_001101930.1"
                     /db_xref="GeneID:361462"
                     /db_xref="RGD:1307562"
                     /translation="MASATSNCQAGLLRFLRLVGQLKRVPRTGWVYRNVEKPESVSDH
                     MYRMAVMAMVTRDDRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMK
                     EITQLLPEDLRKELYELWEEYETQSSEEARFVKQLDQCEMILQASEYEDMENKPGRLQ
                     DFYDSTAGKFSHPEIVQLVSELETERNASMATTPSEPGS"
     exon            108..229
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /inference="alignment:Splign:2.1.0"
     exon            230..332
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /inference="alignment:Splign:2.1.0"
     exon            333..401
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /inference="alignment:Splign:2.1.0"
     exon            402..540
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /inference="alignment:Splign:2.1.0"
     exon            541..944
                     /gene="Hddc2"
                     /gene_synonym="RGD1307562"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgaggac gtcaccaacc agctctttac actccagcat ggcttcggcc acatccaact
       61 gccaggccgg gctgttgcgt tttctgcgtc tagtcgggca gctcaagaga gtcccacgga
      121 ctggctgggt atatagaaac gttgagaagc cggaaagcgt gtcagatcac atgtaccgga
      181 tggcagttat ggctatggtg accagagatg accgtcttaa caaggataga tgtatacgcc
      241 tagccctggt tcacgatatg gcagaatgca tcgttgggga catagcacct gcagataaca
      301 tccctaaaga agaaaagcac agaagagagg aggaggccat gaaagagata acccagctgc
      361 tgccagagga cctcaggaag gagctatatg aactctggga agagtatgag acccagtcta
      421 gtgaagaagc caggttcgtg aagcagctgg accagtgtga aatgatcctt caggcatcag
      481 agtatgaaga catggagaac aagcctggga ggcttcagga cttctatgat tccacagcag
      541 gaaaattcag tcatcctgag atagtccagc ttgtttctga gctggagaca gagagaaatg
      601 ccagcatggc cacaaccccg tcagagccgg gctcctgatg gccacagccc cgtcagagcc
      661 gggctcctga tggccacagc ctcgacagag ccgggctcct gagctcacct tgctgctcca
      721 cagcgctgct ttgtttgttc cctgggggtt ttcccaagat gagcgtctgt tttctgttgt
      781 ccggacttga acaagaaatg tgatgtaatc caggccctaa aagaagccac caaaccagaa
      841 gtggtcagga aggtgctgtg gatgaagact ggagaagaga atgctttttt gtgtgaatta
      901 aaaaacaaaa caaaacaaaa caaaaaaaaa caccaaaaaa ctcc
//
