LOCUS       NM_001011934            2721 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus HBS1-like translational GTPase (Hbs1l), mRNA.
ACCESSION   NM_001011934 XM_215034
VERSION     NM_001011934.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Franckenberg,S., Becker,T. and Beckmann,R.
  TITLE     Structural view on recycling of archaeal and eukaryotic ribosomes
            after canonical termination and ribosome rescue
  JOURNAL   Curr Opin Struct Biol 22 (6), 786-796 (2012)
   PUBMED   23031510
  REMARK    Review article
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 2721)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   4  (bases 1 to 2721)
  AUTHORS   Pandit,R.A., Svasti,S., Sripichai,O., Munkongdee,T.,
            Triwitayakorn,K., Winichagoon,P., Fucharoen,S. and
            Peerapittayamongkol,C.
  TITLE     Association of SNP in exon 1 of HBS1L with hemoglobin F level in
            beta0-thalassemia/hemoglobin E
  JOURNAL   Int J Hematol 88 (4), 357-361 (2008)
   PUBMED   18839276
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079463.1.
            
            On Feb 11, 2005 this sequence version replaced XM_215034.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079463.1, SRR8487231.82796.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p12"
     gene            1..2721
                     /gene="Hbs1l"
                     /note="HBS1-like translational GTPase"
                     /db_xref="GeneID:293408"
                     /db_xref="RGD:1308509"
     exon            1..122
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..2119
                     /gene="Hbs1l"
                     /codon_start=1
                     /product="HBS1-like protein"
                     /protein_id="NP_001011934.1"
                     /db_xref="GeneID:293408"
                     /db_xref="RGD:1308509"
                     /translation="MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSR
                     RDNPEEEYGYEDLKESSNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAIL
                     KHKFDVQKALSVVLEQDGVQTLKEKSERAVCAGQPSKVISRSSQSESEIVPKVAKMTV
                     SGKKQTMGFEVPGLPSEENGHNVRAPYKGPPGDDVSIASPNVPETGTPKSTAHPPSLQ
                     TSEELGCTPTPLRKSGKLRQQIDVKAGLEKRQGGKQLLNLVVIGHVDAGKSTLMGHML
                     YLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKV
                     VTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLG
                     VTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSR
                     SQSSDLTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGY
                     VQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGP
                     KEPIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTK
                     KKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE"
     exon            123..188
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            189..302
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            303..497
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            498..597
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            598..863
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            864..1029
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1147
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1294
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1369
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1487
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1556
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1661
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1662..1752
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1753..1861
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1862..1962
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1963..2107
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2108..2690
                     /gene="Hbs1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctcctgcg gtccgcgtct cgtcggtgtc tgagcggagt tcttctggaa gggacggcgg
       61 cagacgccct caatgcgcga tggcccggca tcggaacgtc cggggctata actatgatga
      121 agattttgaa gatgatgact tgtacggcca gtctgtggag gatgactatt gcatctcacc
      181 atcaacagct gctcagttca tttactcacg acgtgacaac cctgaagaag aatatggtta
      241 tgaagatctg aaagagtctt ctaattctct tttgaatcac caattaagtg aaatcgacca
      301 agctcgcctt tattcatgcc ttgatcacat gagagaggta ctgggggacg ccgtgcctga
      361 tgacatactg actgaggcaa ttctgaaaca taagtttgat gtgcagaagg cgttgtcggt
      421 ggttctggaa caagatggtg tgcagacttt gaaggagaag agtgagcgag cagtgtgtgc
      481 aggacagcct tcaaaagtta tatctcggtc atcccagagt gaatctgaaa ttgtgccaaa
      541 agttgcaaag atgactgtgt ccgggaagaa gcagaccatg ggatttgaag tgcccggctt
      601 accttctgag gaaaatggac acaatgtgcg cgctccttac aaagggcctc ctggagatga
      661 tgtgagcatt gcctctccta atgttcctga gaccggcact ccgaaatcca ccgcccaccc
      721 tccctccctt cagacgtcag aagagctggg ctgcactccg acaccactga ggaagtctgg
      781 caagctgagg cagcagatag acgtgaaagc gggattggag aagcggcagg gcgggaagca
      841 gctcctcaac ttagtggtca ttggtcatgt tgatgctggg aaaagtactc tgatgggcca
      901 tatgctttat cttctgggta atgtaaacaa aagaactatg cataagtatg agcaagaatc
      961 taaaaaggct ggcaaggctt catttgcata tgcatgggtc ttggatgaaa ctggagaaga
     1021 aagggaaagg ggagtaacaa tggatgttgg catgacgaag tttgaaacca caaccaaagt
     1081 tgttacctta atggatgctc caggccataa ggatttcatt ccaaacatga tcacaggagc
     1141 agcccaggct gacgtggcag tcttggtcgt tgatgccagc aggggagaat ttgaagctgg
     1201 atttgagacg ggaggacaga cccgagagca tggccttttg gtccgatctc ttggagtgac
     1261 gcagcttgct gtggctgtca ataagatgga ccaggtaaat tggcaacaag aaagatttca
     1321 agagattact ggaaaacttg ggcactttct caagcaagca ggttttaagg agagtgatgt
     1381 agcttttatc ccaaccagcg gtctgagtgg cgagaattta acttcaaggt cacagtccag
     1441 tgacctcacg aagtggtaca aagggctctg cttattggag cagattgatt ccttcaagcc
     1501 ccctcagcgt tccattgaca aacctttcag gttatgtgtg tctgatgtct tcaaagatca
     1561 aggatctggc ttttgtgtga ctggtaagat tgaagccggc tatgtccaga ctggtgaccg
     1621 actgttagcc atgccgccca atgaaacctg tactgccaaa ggaatcactc tgcacgacga
     1681 acctgtcgat tgggcagcag caggagatca cgttagtctt actttggttg ggatggatat
     1741 catcaaaatc aatgttggct gcatattttg tggacccaaa gaacccatta aagcttgcac
     1801 tcgcttcaga gcccggattc tcatcttcaa tattgaagtt cccatcacta aaggctttcc
     1861 tgtgctgtta cactaccaaa ccgtcagtga gcctgctgtt attaagcgat tgattagtgt
     1921 cctaaacaaa agtaccggtg aagtcacaaa gaagaagccc aagttgttga ccaagggcca
     1981 gaatgccttg gtagagctgc agacacaaag accagtggct ctcgagctct acaaagactt
     2041 caaggagctg gggcggttta tgctgcgtta tggtggctcc acggtagctg ctggcgttgt
     2101 cactgagata aaagagtgac ggtccagtcc tccccacgtt tccagatgag acagcccctg
     2161 aagcactcag tggtgcagct aaggaaacgg catgcagtca tgattgtgta gatgagagaa
     2221 actaaagttc aggtagctgc ccaccagtat taacgatcac tcccgcacgg cttccaggct
     2281 gccggcttcc aggctgccag cattggactc tcgttccttc cttttgcggt ggcagtaaat
     2341 gcatttgttg tgctgagact gtgaagatca gaagacactt aactcagtgg actcaacctc
     2401 cagccaagcc aaaaccagaa gcctctgttt tcactctcct gctgtgtgtg ttctaaggaa
     2461 gcctatctta ctggggctgg gagagtccat ctgtgacctg gtgctttttt tggttaacac
     2521 taagaaaaga tttagtgaag gtaacagagt aaagctattt tgtgctgaaa atgaaaccgt
     2581 ccatctagtc tgccttctgg agtgtgatgg gaagtgacgg acacctgttc ttaggtcaca
     2641 aagatactat ttaagttgaa aagccagcta ataaaatgcc ttagtttgaa aaaaaaaaaa
     2701 aaaaaaaaaa aaaaaaaaaa a
//
