LOCUS       XM_039101872             896 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus HCLS1 associated protein X-1 (Hax1),
            transcript variant X8, mRNA.
ACCESSION   XM_039101872
VERSION     XM_039101872.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101872.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..896
                     /gene="Hax1"
                     /gene_synonym="HAX-1; Hs1bp1"
                     /note="HCLS1 associated protein X-1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 30 ESTs, 5 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 74 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291202"
                     /db_xref="RGD:727960"
     CDS             142..717
                     /gene="Hax1"
                     /gene_synonym="HAX-1; Hs1bp1"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X8"
                     /protein_id="XP_038957800.1"
                     /db_xref="GeneID:291202"
                     /db_xref="RGD:727960"
                     /translation="MTRDDDDDEDDEEEEDSELPGPESETPGVRLREGQTLRDSMLKY
                     PDSHQPRIFEGVLESHAKPESSKPAPDWGSQGPFHRLDDTWPVSPHSRAREDKDLDSQ
                     VSQEGLGPLLQPQPKSYFKSISVTKITKPDGTVEEHRTVVDSEGRRETTVTHQEAHDS
                     SRSDPDPPRSSALDDPFSILDLLLGRWFRSR"
ORIGIN      
        1 gaaacggaaa cacgtcttgg ggtctggcag atcggcagga agaagaatca cctagaaggg
       61 atgtgatcct tggacagtgg gaatttcgca cgtccacccc cactcaaaac tgaaagccac
      121 agagatcctt tttttggagg gatgactcga gatgatgacg atgatgaaga cgacgaagag
      181 gaggaagaca gtgaacttcc aggtcctgag tcagaaacac ctggtgtgag attgcgagag
      241 gggcagacac ttcgtgactc aatgcttaag tacccagata gtcaccaacc caggatcttt
      301 gagggggtct tggagagtca tgcaaaacct gaatcctcca aaccagctcc agattggggg
      361 tcccagggac cttttcatag gttggatgat acatggcctg tgagtcccca ttctagagcc
      421 agagaggaca aggatcttga ctcccaggtt tcccaggaag gtctgggtcc acttcttcaa
      481 ccccagccta aatcctattt caaaagcatc tctgtgacca agatcactaa gccagatggg
      541 acagtggagg aacaccgcac tgtggtggac agtgagggcc ggagagagac cacagtgacc
      601 catcaagaag cccatgacag ttccagaagt gatccagatc ctccaagatc ttcagctttg
      661 gatgatccct tttccatcct ggacctgctt ctaggacgtt ggtttcggtc ccgatagctt
      721 tcttgaactt cagaggcctt caggtccttc ccaccccctc cctccctgtt gcccattgcc
      781 aataagcata gcttttgctg tcatcctggg gtcttaaatg tgtggaacaa ttaatcgagc
      841 ttatgccagt ctgtcattca tccgaactga acaataaagc ctttatttat gttaaa
//
