LOCUS       XM_039101866            1190 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus HCLS1 associated protein X-1 (Hax1),
            transcript variant X2, mRNA.
ACCESSION   XM_039101866
VERSION     XM_039101866.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101866.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1190
                     /gene="Hax1"
                     /gene_synonym="HAX-1; Hs1bp1"
                     /note="HCLS1 associated protein X-1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 28
                     ESTs, 5 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 26 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:291202"
                     /db_xref="RGD:727960"
     CDS             169..1011
                     /gene="Hax1"
                     /gene_synonym="HAX-1; Hs1bp1"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X2"
                     /protein_id="XP_038957794.1"
                     /db_xref="GeneID:291202"
                     /db_xref="RGD:727960"
                     /translation="MQQGPERRKQWGSGKEDREQVIGHRDPFFGGMTRDDDDDEDDEE
                     EEDSGAWGRESYAFDGFHPTEEFGFSFSPRGGMRFHGNFGFDDLVRDFNSIFSEMGAW
                     TLPSHSPGPESETPGVRLREGQTLRDSMLKYPDSHQPRIFEGVLESHAKPESSKPAPD
                     WGSQGPFHRLDDTWPVSPHSRAREDKDLDSQVSQEGLGPLLQPQPKSYFKSISVTKIT
                     KPDGTVEEHRTVVDSEGRRETTVTHQEAHDSSRSDPDPPRSSALDDPFSILDLLLGRW
                     FRSR"
ORIGIN      
        1 gtgttttggt ggacacttga ccccttcata tttttggaaa gtttcctttc ccgccccctt
       61 taactcttgc tgagaggtca aagatcgcat tcttgagtac tcacccgcca cagtaatcaa
      121 agcgttggtt aagaggacag aaacggcacc tttctccaga ctggggtgat gcaacaggga
      181 cctgagcgga gaaaacaatg ggggtctggg aaagaggacc gtgagcaagt cattggccac
      241 agagatcctt tttttggagg gatgactcga gatgatgacg atgatgaaga cgacgaagag
      301 gaggaagaca gtggtgcgtg gggtcgagag agctatgcgt ttgatggttt tcaccctaca
      361 gaggaattcg gtttcagctt cagccccaga ggagggatgc gattccatgg caactttggc
      421 tttgatgatc tagttcgaga ttttaatagc atcttcagcg agatgggggc ctggaccttg
      481 ccttcccact ctcctggtcc tgagtcagaa acacctggtg tgagattgcg agaggggcag
      541 acacttcgtg actcaatgct taagtaccca gatagtcacc aacccaggat ctttgagggg
      601 gtcttggaga gtcatgcaaa acctgaatcc tccaaaccag ctccagattg ggggtcccag
      661 ggaccttttc ataggttgga tgatacatgg cctgtgagtc cccattctag agccagagag
      721 gacaaggatc ttgactccca ggtttcccag gaaggtctgg gtccacttct tcaaccccag
      781 cctaaatcct atttcaaaag catctctgtg accaagatca ctaagccaga tgggacagtg
      841 gaggaacacc gcactgtggt ggacagtgag ggccggagag agaccacagt gacccatcaa
      901 gaagcccatg acagttccag aagtgatcca gatcctccaa gatcttcagc tttggatgat
      961 cccttttcca tcctggacct gcttctagga cgttggtttc ggtcccgata gctttcttga
     1021 acttcagagg ccttcaggtc cttcccaccc cctccctccc tgttgcccat tgccaataag
     1081 catagctttt gctgtcatcc tggggtctta aatgtgtgga acaattaatc gagcttatgc
     1141 cagtctgtca ttcatccgaa ctgaacaata aagcctttat ttatgttaaa
//
