LOCUS       NM_001401872            6169 bp    mRNA    linear   ROD 26-APR-2024
DEFINITION  Rattus norvegicus HAUS augmin like complex subunit 6 (Haus6), mRNA.
ACCESSION   NM_001401872 NR_174982 XR_592580
VERSION     NM_001401872.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6169)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On May 10, 2023 this sequence version replaced NR_174982.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1144660.1,
                                           SRR26360176.612958.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-338               JAXUCZ010000005.1  106198735-106199072 c
            339-434             JAXUCZ010000005.1  106195322-106195417 c
            435-513             JAXUCZ010000005.1  106193004-106193082 c
            514-646             JAXUCZ010000005.1  106191494-106191626 c
            647-791             JAXUCZ010000005.1  106188484-106188628 c
            792-857             JAXUCZ010000005.1  106186697-106186762 c
            858-906             JAXUCZ010000005.1  106185970-106186018 c
            907-1077            JAXUCZ010000005.1  106184467-106184637 c
            1078-1271           JAXUCZ010000005.1  106181331-106181524 c
            1272-1398           JAXUCZ010000005.1  106180776-106180902 c
            1399-1501           JAXUCZ010000005.1  106179603-106179705 c
            1502-1583           JAXUCZ010000005.1  106174726-106174807 c
            1584-1650           JAXUCZ010000005.1  106169979-106170045 c
            1651-1833           JAXUCZ010000005.1  106169451-106169633 c
            1834-1969           JAXUCZ010000005.1  106168980-106169115 c
            1970-2950           JAXUCZ010000005.1  106166541-106167521 c
            2951-6169           JAXUCZ010000005.1  106162526-106165744 c
FEATURES             Location/Qualifiers
     source          1..6169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q31-q32"
     gene            1..6169
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /note="HAUS augmin like complex subunit 6"
                     /db_xref="GeneID:366403"
                     /db_xref="RGD:15203474"
     exon            1..338
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     CDS             211..3000
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /note="family with sequence similarity 29, member A"
                     /codon_start=1
                     /product="HAUS augmin-like complex subunit 6"
                     /protein_id="NP_001388801.1"
                     /db_xref="GeneID:366403"
                     /db_xref="RGD:15203474"
                     /translation="MSSARDSAFEKQHLWMYLQALGLDPSSGVRVGGKMVSYAHLGED
                     MFDKLNRDAFHIVSYFLFKTLDESLAKEVFRDCWPPFDQKLDMEFRKHCCEWLKEISA
                     ECGSSFPQVVGSLLMSPGGPKFIHLMYHFARYVAIKYIKTNSNNSPHFAETFNAKPQD
                     MHKCLARCHVARNRFLQVLQREHYVTQKYQDNAHLIVKQVRNARSECMGLQNQIKRLG
                     PCDEKSNIQEKIQKVRSLWTSVNETLMVLEKEREVVSSLFSFVNQYALDGASISVNIP
                     RLLLDRLEEQICQLQIGNVYEAGKLNLLTIIQLLNEVLKVMKYEHCKAGQARLTIDLH
                     YLEKETKFQRERLSDMKNMRHKIKENVTAIRHSTVEKEEKWHTKWKGFLGVSPFSLIK
                     GGPSAVDLLPPMSPLSFDPVSEEVYAKSVLFKYPASLPDLHKEVKQEDGGRREVDTPG
                     NVCDGADSPVPFPLQCASSSDTNSFTLLEKDPNMRTPKEKNVPYKKIAGSELEDSPLS
                     DTAKNAQSSVSGGSLLEKKSDPFQREQDQLVDEVARVVLSDSPQLSEGKEVKLEELID
                     TLISNPFLTRKQIPRTPDNLIADIRSSWRKAVETEVNRSSDGILVDAKAGDVSSESSS
                     TLHNQREFSMAIFSPDFDGSYLPEEKAVPDQLTSVPQKHLVTSQISEPPTEDESDLIN
                     KKMICKQDLECAATRLSETRQMEAFSPAVGSGIDVMGRSKEDCVRLLDYSQASCSEPS
                     THKTLLWDSFQRLSGIGILHETLPEEVGHLSLNSSTNSETTFHLEPKSYVDSDAFPDG
                     VGKRPAIPELDSNLQSLLSSYEALKKSLNKIRKESRLSNLEQHKIELSPVAKQVDDTC
                     TVLDTQDLFVDCTKLSSHVSFDERTQTVSPLSKAFLVEQKLRTTLPCRLGEFLPNLKE
                     EEISSKSLEARDSLI"
     exon            339..434
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            435..513
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            514..646
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            647..791
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            792..857
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            858..906
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1077
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1271
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1398
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1501
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1502..1583
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1584..1650
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1833
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1834..1969
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2950
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
     exon            2951..6169
                     /gene="Haus6"
                     /gene_synonym="Fam29a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtttgcgtg tatcgctgca gtcactgccc tggttttctg ggcgcgttcg gccttttgtg
       61 gtgtgatggc tcttggagag gaggcagcag gcggccgcag cagaggggtt gccgtcacct
      121 cgggatgcct gtaggaggag gggtccaagg gtcctcacgg tttcggtgcc ttcgttttcc
      181 tccgtcagag tcgccgtgcc tttggaaagc atgagctccg cccgggactc cgctttcgag
      241 aagcagcatc tctggatgta cctgcaggcg ctgggtttgg atccgagttc cggcgtcagg
      301 gtcggcggga agatggtatc ctacgcgcac cttggagagg acatgtttga caaactgaac
      361 cgcgatgcct ttcatatagt ttcctatttt ttgtttaaaa cactggatga gtctcttgcc
      421 aaagaagttt tcagagattg ctggcctcca tttgaccaaa aacttgacat ggaattccgg
      481 aaacattgct gtgaatggtt aaaagagatt tctgctgaat gtgggagtag ttttcctcag
      541 gttgttggct cattgcttat gtctcccggt ggtcctaagt ttattcatct gatgtatcat
      601 tttgcaagat atgttgcaat caaatacatt aaaacaaact ctaacaattc tccacatttt
      661 gcagaaacat ttaatgcaaa gccacaagat atgcacaagt gccttgccag atgccatgta
      721 gcacgcaaca gatttttaca ggttttgcaa agagaacatt atgttaccca aaaataccag
      781 gataatgcgc atctgattgt taagcaagta cgaaacgcaa gatcagaatg catgggtcta
      841 caaaaccaaa ttaaaagact gggaccctgt gatgaaaaga gtaatataca agagaagatt
      901 caaaaggttc ggtctttgtg gacttcagtg aatgagacac tcatggtttt ggaaaaggag
      961 agagaagttg ttagctcact cttcagtttt gtcaaccagt atgctttgga tggggctagt
     1021 atttctgtta atattccaag gctcttactt gacagactag aggagcagat atgtcagttg
     1081 cagataggaa atgtttatga ggctggaaaa ttgaacctct taacaattat tcagttgtta
     1141 aatgaagtct tgaaagtaat gaaatatgaa cattgtaagg ctggccaagc aagattgaca
     1201 atagacctcc actaccttga aaaagaaacc aaatttcaga gggaaagatt atcagatatg
     1261 aagaacatga ggcataaaat aaaagagaac gtcactgcaa taagacattc tactgttgaa
     1321 aaggaagaaa aatggcatac gaagtggaaa gggtttcttg gtgtgtctcc tttcagtcta
     1381 attaaaggcg ggccttcagc tgtggatctt ttgcctccca tgtctcccct ttcgtttgat
     1441 cctgtgtcag aggaagtata tgcaaagagt gtacttttta agtatcctgc gtcacttcca
     1501 gatttacata aagaagttaa acaagaagat ggtggcagaa gagaagtgga tactccagga
     1561 aatgtgtgtg atggcgctga cagccctgtg ccttttccct tacaatgtgc ttcgtcctca
     1621 gatacaaaca gtttcacact acttgagaag gatccaaata tgaggactcc caaagagaaa
     1681 aacgtgcctt ataagaaaat agcaggctct gaattggaag actctccttt atcagatact
     1741 gcaaagaatg cacagagtag tgtatccgga gggtctctgc tggagaaaaa gagtgatcca
     1801 ttccagagag agcaagatca gctggtggac gaggttgcca gagtagttct gtctgattca
     1861 ccacagctct ctgagggaaa agaagtcaaa ttggaggagc taattgacac tttaatttct
     1921 aatcccttct taaccaggaa acaaattccc cggactccag ataacttgat agctgatatt
     1981 agaagctcat ggagaaaagc tgtcgaaact gaagttaaca gaagttcaga tgggattcta
     2041 gtggatgcca aagctggaga cgtgtcgtca gagtcttcat ctacactgca taatcagagg
     2101 gaatttagca tggctatttt ttccccagat tttgatgggt cttatttgcc tgaagagaaa
     2161 gctgttccag atcagcttac cagtgtacct cagaaacatc tggtaacgag tcagatcagt
     2221 gaacccccaa cagaagatga gtcagacttg ataaataaga aaatgatttg taagcaagat
     2281 ttagaatgtg cagccaccag gctttcagaa actagacaaa tggaggcatt ctcccctgct
     2341 gtgggcagtg gaatagatgt gatgggtaga agtaaagagg actgtgttcg actgttggac
     2401 tactcacaag cttcttgcag tgaaccttcc acgcataaga ctttgctatg ggattctttc
     2461 cagaggttga gtggcattgg catattacat gagactcttc cagaagaagt tggtcaccta
     2521 agtcttaata gttctacaaa ttcagagacc acttttcacc tggaaccaaa gtcttatgta
     2581 gacagtgatg cttttccaga tggtgtgggg aaaagaccag ctattccaga attagattcc
     2641 aatttacagt ctcttctcag tagttatgag gctctgaaga aatctcttaa caaaatcagg
     2701 aaagaatctc gcctgtctaa ccttgaacaa cacaaaatag aattgagtcc tgtagccaag
     2761 caagtagatg atacatgcac tgttttggac actcaagatt tgtttgttga ctgcacaaag
     2821 ctgtcttccc acgtgtcctt tgatgaaaga acacagactg tatcacctct atctaaagct
     2881 tttctggtgg agcaaaaatt gaggaccaca ttaccatgta ggcttgggga atttctgcct
     2941 aatttaaaag aagaagaaat ctcaagtaag agccttgaag caagagactc tctgatttga
     3001 caagataaag cattttccag ttgatttagc tgatgcactt actctgaagc cttgtcactt
     3061 aactgcagct gagatccaca cattggaagt gtaattctct ttctagcatc agagaagttc
     3121 tgaatgtact ttggcttctt ataatgtgtt taggtctttc tctctctctc tttttcttgc
     3181 taaatattat gagtttgaaa tgtgaagtat ttaagaacag cgaatgtcaa attttagaaa
     3241 accattttga ttcctagaat aatcttataa gtaaattaca aatatagtta tgttaaaaat
     3301 attagtcatg gggttgggga tttagctcag tggtagagcg cttgcctagc aagcgcaagg
     3361 ccctgggttc ggtccccagc tccggaaaga aaaagaaaaa agaagaaaaa aaatatcagt
     3421 cattaacata aggatgggtg cataatctaa tagccactaa atagccatat ctctctcatt
     3481 ttagagaaat aaaccatttt actggatctt gatggatatt atggtaataa cacaaaatga
     3541 atgaggtgta gtacccttgg atgtgtaatc aaagcaacac actgtaacgt ttgtaaaatt
     3601 gtaaacagac ttaatgaatt ctaagtatat tggtcctgca gaatgatgtt gatgggataa
     3661 aatgcatgta tgtgataggt gaagatgaaa tggagtgaat tgaggagatg gggaaaggta
     3721 gaagatggcc agatgtttaa agaacagtca gactctgttt tgtgtatgtt agactgagaa
     3781 tttaattcta tttatattta acaagaatat caatgagaaa tttgcaaatt tgttttacag
     3841 ttgtggtctg tgggtggtat ggtgggtgtt gtttgtggaa agcaacaagg ttttattact
     3901 tactgattga aagcattaaa gttccctagt gcctacagaa tattccaaaa tagttttgag
     3961 aaaatcgaac atggatttaa catttataca ttttgcctta ttgtcagagg tcttgtttgt
     4021 gtcatccaag gaatagatac atgtgcctta ataagcctga ctagaagagg ctctaaaagg
     4081 ttggtttatc tccttctatt ctgtgcagag cctcagtttg taactttcaa aatcctgtcc
     4141 ccaagtctta agaaaaggaa gaagagaaag gtagatgggc tgagtgtcag aaggattgta
     4201 taagagctgt ttacagggag ggaaagagga catgtttccg agggctctgg ttccttcacg
     4261 agtgcagcag agcagactgt tcgggtgtac tgggaaatca cttgttgttg acaaacagcc
     4321 tggtatctag actcgaagca tgttagggga gaagaaggac tatcagagga gcctctgtca
     4381 tccagagcca atgctaagtg tttaatacac atggttgcat ttaacctttg taattgagat
     4441 aggaggtata cctcgcctgc agattctgaa gcgagtgaga gattaagtgg ctggggtggg
     4501 atgccggggc cacctgtatt aggatcatct gagatgcctg tttaaagatg cttattgaga
     4561 gagggtctgg aaatctcatt cagatatgca tccatggcca ctcacaggct cagcagctcg
     4621 atgcagagac tgagatgcac ggttagcccg aggtaccttt aagacggggc acactgtcgt
     4681 atgcatattg ctcagccctt cattatgaga gttgaaaggt caagtatctg gatatcttgg
     4741 gtttataaga gtcactgaaa tttgcctgtg gatggctgaa cattcctgaa ctcattattt
     4801 cttgtttcag caccatgatc aaatctccaa tctgtcactt ccaaaactga tagtaactta
     4861 atgctttcag tgctttcccg cacagcgtct cctgcagctc tgtgatgggt agcagctact
     4921 tggatcttgt caggtccttg cttacaagcc cattgatggt tcattgcaat tacagaacag
     4981 ggtttggttt aaagacagct cccttactta gacacccctc cccccaaact tttacagtac
     5041 ttaccttgtc cttctagctc atctcagttt tttaatttga cttgaagact ttaagaacct
     5101 ttcattatag cggttaggat tttttaaatt ttttatttat tttcacatgt gtggatgttt
     5161 gcctacatgt ctgtctgtgt acctttttgg tgcctggtgc tccctgagga gggagtcaga
     5221 tcctctggga ctggagttgg ctagtacttg aacctgggtc acaggatgag cagccactga
     5281 ggcatctctc cagccagtta tagttccttt agaactcaga acaacacctt cgatcccagc
     5341 acttgggaag gcaggctgat ctgagtctag tctacaaagt cagttccagg acagccgcca
     5401 gggctacaga gtgagaccct atctgtaaaa caagagctga aggctcagac aaatcacgtg
     5461 gtctgccttg atgtcttaat ttgccctcct agatccatgg tctgacatcc tttttgaagt
     5521 ctattgtgta actcttttgt gtgggagggt ggggggtggg aggtagggat cttgcagttg
     5581 ttcaggttag cttcagctca cagcagtctt cctgcctcgg tctcccaagt gctggaacta
     5641 cagatgttta cttagttttt acttagtgtc tttgtccccc actgtacgtg atttctgatc
     5701 acagctgtgc acacaccttc ttacctgtgt agatgtctgt agggtatgta tactgctgag
     5761 catggaaaat gctgacaagt aagataagag tacttaagga gcatttgggg gacagggacc
     5821 aagctcaaca aaattctaaa cagacatttt gaaaccttta cagtagtttt cttagttata
     5881 aggtctgata ccaattttac ctaaagtgta gatgggaatt cttgagacct gtataaaagc
     5941 aaactttttt tccctagtgt actaaaaaaa tgtgtttcaa aacatttcat ttaatgtgtg
     6001 aagacattat gaagatcaga tgcctggttg ctctcaagag cacccaactc tttatgcacg
     6061 gagagctggc aagttcatgt tcttaagtgg gaaatgccta tgttctaagg actgtttgga
     6121 agtgtgttct acaaactgct gtctagaata aatactcagt gtttcacca
//
