LOCUS       NM_001113793            1460 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus harbinger transposase derived 1 (Harbi1), mRNA.
ACCESSION   NM_001113793 XM_001073524 XM_001078183
VERSION     NM_001113793.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1460)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC158734.1.
            
            On Aug 30, 2012 this sequence version replaced NM_001113793.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158734.1, SRR8487227.342923.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1460              BC158734.1         1-1460
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..1460
                     /gene="Harbi1"
                     /note="harbinger transposase derived 1"
                     /db_xref="GeneID:690164"
                     /db_xref="RGD:1584007"
     exon            1..38
                     /gene="Harbi1"
                     /inference="alignment:Splign:2.1.0"
     exon            39..840
                     /gene="Harbi1"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..1220
                     /gene="Harbi1"
                     /EC_number="3.1.-.-"
                     /note="Harbinger transposase-derived nuclease"
                     /codon_start=1
                     /product="putative nuclease HARBI1"
                     /protein_id="NP_001107265.2"
                     /db_xref="GeneID:690164"
                     /db_xref="RGD:1584007"
                     /translation="MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQ
                     FIYYLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSR
                     CVANVTEALVERASQFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNA
                     EDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPK
                     DSWLLGDSSFFLHTWLLTPLHIPETPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDG
                     SKGALQYSPEKSSHIILACCVLHNISLEHGMDVWSSPVTGPIEQPPEGEDEQMESLDL
                     EADRIRQELILTHFS"
     exon            841..1460
                     /gene="Harbi1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggagtgtg cgccgggtaa ttcggtagct acggaaagca tttacagaag gaagattata
       61 aatgtcagcc atttaactga tgggttagct gttaaattct gatgcttttt gtgccagcct
      121 cttcactgga aaaatttcag gaaaagcaga agagaacatc cacattagca atggctatac
      181 caataacagt gcttgactgt gatctcttgc tctatggccg aggtcaccgg accttggacc
      241 gttttaagct ggatgatgta actgatgaat acctgatgtc catgtatgga tttccccgac
      301 aattcattta ctacttagtg gaactcttgg gggcaagtct ttctcgacct actcagcgat
      361 ctagggctat tagcccagag acacagatcc tggcagcatt agggttttat acctcaggtt
      421 ccttccagac tcgaatggga gatgcaattg gaattagtca agcctctatg agtcgctgtg
      481 ttgccaacgt cactgaagcc cttgtggagc gggcctcaca gtttattcac tttccagctg
      541 acgaagctgc catacagtct ctaaaggacg aattctatgg attggcaggg atgccagggg
      601 tgataggggc agttgactgt atccatgtag caatcaaggc accaaatgct gaagacctct
      661 cttacgtgaa ccggaagggt ctgcattctt taaactgcct ggtggtatgt gacatcagag
      721 gggcactgat gactgtggag acaagctggc caggtagcct gcaggactgt gctgtgctac
      781 agcagtcttc tttatccagt cagtttgaaa ctgggatgcc caaagatagc tggcttcttg
      841 gtgacagttc cttctttctc cacacctggc tcttgactcc actgcatatt cctgaaactc
      901 cagcagagta tcgctataat agggcccatt ctgcaactca cagtgtgata gagaagactt
      961 tgcggaccct ctgctgtagg ttccggtgcc tggatggatc gaaaggggcg ctgcagtact
     1021 caccggagaa atccagccac atcatcttag cttgctgtgt ccttcacaac atttccctgg
     1081 aacacgggat ggatgtgtgg tcctctcccg tgactggacc cattgagcag ccccctgagg
     1141 gcgaggatga gcaaatggag tctctggact tagaggctga ccgaatccgg caggagctga
     1201 tactcactca ttttagttaa tatggaaggt agagggagga ggaagagttt ccagaatgaa
     1261 ctgtgacaac gttccccctt actagccatt gggaagttca atcatccagt ggtactgaat
     1321 gtgggcactt gtcatgaatt aacatttaaa attttagatg gggggttggg gatttggctc
     1381 agtggtagag cacttgccta gcaagcgcaa ggccctgggt tcggtcccca gctccaaaaa
     1441 aaaaaaaaaa aaaaaaaaaa
//
