LOCUS       NM_001108398            3687 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus hyaluronan and proteoglycan link protein 4
            (Hapln4), mRNA.
ACCESSION   NM_001108398 XM_001071382 XM_341416
VERSION     NM_001108398.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3687)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474031.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001071382.1, XM_341416.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMN12840130 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3687
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..3687
                     /gene="Hapln4"
                     /note="hyaluronan and proteoglycan link protein 4"
                     /db_xref="GeneID:361129"
                     /db_xref="RGD:1308408"
     exon            1..91
                     /gene="Hapln4"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1291
                     /gene="Hapln4"
                     /codon_start=1
                     /product="hyaluronan and proteoglycan link protein 4
                     precursor"
                     /protein_id="NP_001101868.1"
                     /db_xref="GeneID:361129"
                     /db_xref="RGD:1308408"
                     /translation="MACAPGALGHRALWAVAWGLLLLVPVLAGAQRGRKKVVHVLEGE
                     SGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFADVFVA
                     LGPQHRAFGPYRGRAELQNDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLD
                     LEGVVFPYHPRGGRYKMTFAEAQRACAEQDGILASAEQLHTAWRDGLDWCNAGWLRDG
                     SVQYPVSQAREACGGSGSPGAGGGTNGGVRNYGYRHNAEERYDAFCFTSNLPGRVFFL
                     KPLRPVALAGAVRACAARGATVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPR
                     TRCGGPRPGVRSLGFPDASRRLFGVYCYRAPGAPDPAPGGWGWGWAGGGGWAGGSRDP
                     AAWTPLRV"
     exon            92..212
                     /gene="Hapln4"
                     /inference="alignment:Splign:2.1.0"
     exon            213..575
                     /gene="Hapln4"
                     /inference="alignment:Splign:2.1.0"
     exon            576..899
                     /gene="Hapln4"
                     /inference="alignment:Splign:2.1.0"
     exon            900..3687
                     /gene="Hapln4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcggcccg cgggaccagc tggcccgacc gctgtgcgcg tgcgcagtcg ggaagcgcac
       61 tggccgctca gcgggggcca cgaccaggat ggcgtgtgct ccaggagccc tcggtcaccg
      121 cgcactctgg gccgtggcct ggggactcct gctgctggtc cccgtgctcg caggggcgca
      181 gcgtggcagg aagaaagtcg tgcacgtgct ggagggcgag tccggttcgg tggtggtgca
      241 gacggcgccg gggcaggtgg tgagccaccg cggtggcacc attgtcttac cctgccgtta
      301 ccactacgag gcggccgccc acggtcacga cggcgttcgc ctcaagtgga cgaaagtagt
      361 agaccctttg gctttcgccg atgtcttcgt ggctctgggt ccccagcatc gagccttcgg
      421 tccctaccga gggcgggccg agctacagaa cgatggaccc ggggacgcct ccctggtcct
      481 ccgaaatgtc accctgcagg actacgggcg ctacgagtgc gaggtcacca atgagttgga
      541 ggatgacgcc ggcatggtaa agctggatct agaaggggtg gtcttcccct atcacccgcg
      601 cggaggccgc tacaagatga ctttcgcgga agcccagcgc gcttgtgcgg agcaggacgg
      661 cattctggca tctgcggagc agctgcacac ggcctggcgc gatggcctgg actggtgcaa
      721 tgcagggtgg ctacgcgatg gctccgtgca gtacccggtg agccaggccc gagaggcctg
      781 tggcggatct gggagccctg gggctggtgg cggcaccaac gggggcgtgc gcaactatgg
      841 atatcgtcac aacgccgagg aacgctacga tgccttctgc ttcacgtcca acctccccgg
      901 ccgcgtgttt ttcctgaagc cgctgcgacc tgtggccttg gccggggccg tgcgtgcgtg
      961 tgcggcacgg ggtgccacag tggccaaggt cgggcagctc ttcgctgcgt ggaagctgca
     1021 gctcttggac cgctgcactg cgggctggct ggcggatggc agcgcgcgct accccatcgt
     1081 gaatccgcga actcgctgcg gaggtcctcg gcccggcgtg cgcagcctcg gtttccctga
     1141 cgcctcccgt cgcctcttcg gtgtctactg ctaccgcgct ccgggtgccc cagacccagc
     1201 tccaggcggc tggggctggg gctgggccgg cggaggaggt tgggccggag ggtcgaggga
     1261 tccggctgcc tggaccccac tgcgtgtcta gatctcggag gatgcgcgtt tgggggtgtt
     1321 gatggctgat ccagggacct catgcacccc ctggataccg agcacgtttc agagtctcag
     1381 agctcccttg gacagaccca tgcggtgcac tgcaggctga tttggctacc tgtggtcttt
     1441 ggacattgac cacacctaaa gtttcctggc tacgtgacat aacttttgcc tgtggtgagc
     1501 tgcaggctga cccacctgtt gtggtccttg gtcgctgact atgatgccct ctgaggatcc
     1561 ctggtagtgg ccaagcccac ttctctggat agtgggtgac tcatctttca tactttgtct
     1621 agaagagtca tgctctctcc caacccccag gatcccagta gaccaacagg actctacggt
     1681 ttcctaaaga tgagccccgc cccctttttg ggctcctgaa gaacaggtgg atgcttcctc
     1741 tctgtcacct ggaggctgga cccccaggat taactggaga cctgcccccc aacccctctg
     1801 cattactggg gagcttgaaa actggtcttg gagagtcaag gacttctccc catcacccgg
     1861 tgaagaaata gaaaactgtg gttcactcac gaggtgatca tggcctgtgt gggcaggtga
     1921 ccagaggctg ggtgttccca ctcttccaga gagtctctat gtttccgagg taacatgcct
     1981 tgtccctggg tcactatgga ggacagaccc aacacctctg gcttcatagg agaatgttcc
     2041 cagctggctc cccggagcag tggccatgcc tatccctcag gtattccctc tggccagaga
     2101 gtagactcgc ctgaatgtcc cgtccctggg ctccttgggg aatatcacca aagagattgt
     2161 tccctcagac cagagacccc taagaatctg acttgtagag acaagctgct cggctcctta
     2221 aggtcacaca ggccaccagt gcagccttac ccgtctcacc cgctacaccc acggaaatgg
     2281 cactgtctgc ctttctctgt aaccatggtt accacacatt tcctttctca ctggcctaaa
     2341 gcccagacac ctatcacttc atttttggct gtccctgccc tggtggacca ccgtggagac
     2401 aatcttcccc attgagtgtc ctcaggggaa cccagcattc agttctccag gactattccg
     2461 tggatcagct gcccctttcc caaagtgcac cttgtttctc tcagcagccc aagccccacc
     2521 cctagacagt ttgaacctcc ggaccgttgt catggagatc aaactctggt gtccaaggaa
     2581 acagaacacc tgtcccttca aggctttccc tccagggtcc catactgtcc agctgttgcc
     2641 atagagaccg tcagtgtctc catgacaact gacctgcagc actcaggaac ttcttgctat
     2701 gggcagagta cctctatctg gagctgccta atgtgttcct caggcgcctg acaaatgtcc
     2761 cttcttcaga cgggcctatg caggcctccg cttgtgggcc agctgcctgc caccacccgt
     2821 ttgcatgcta actctactct ccacgcagca gccaagcagg aaccaccact gcagccccct
     2881 ccagcatttt aaatgttcac cctgcagatg agagaactga ggctgtggtg ctgtacaagc
     2941 tgacctttcc ttcttgaaga tcaaggaggg cagactctcc ctgaaaccac caatttcaac
     3001 ccatttctga gggcccattt ctcaagggtc aagaccagcc caaatgcagg agcctccagt
     3061 tctcaggtgc tgctgggacc agcaagtacc cttgcccaca caccttcctg cctgacccat
     3121 ctatctcggt taactccacc cctaagtctg gaagctaagg ggctgtgggc tccagtcata
     3181 ccttttgttc taaagtatgc agccaaaaac tcacccaggc tcttctctgg actaggattg
     3241 ttctgaggtt cctgaagccc aggttcaata aacctttgtt ccttctgatg aatgcgaaac
     3301 gaggctgccg gtccctctat cagtgtggtg gagttctcag gccaggttca gaagcagctc
     3361 ctctcccctt tcaatgctca caacctgagc atagaaaagc ggaacagttt accaggtgtc
     3421 aagaccagga ccctttgagg tcctgtctga ctcctcatgt gctctgtggc atgagtgcat
     3481 acacataact catcataaca tgattttaaa catgttaaat aggttctggc tgtaaattga
     3541 ggtagtcatc tagattttta tttttcgttt ctttgagaca ggttttcact gtttaaccct
     3601 tgctgtcatg gaatttgcta cacaaaccag tcttgaccct gaactcagtg atctgcctgt
     3661 cccaagtgct gattaatggc gtaagcc
//
