LOCUS       XM_006239788            2087 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hydroxyacyl-CoA dehydrogenase
            trifunctional multienzyme complex subunit beta (Hadhb), transcript
            variant X3, mRNA.
ACCESSION   XM_006239788
VERSION     XM_006239788.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006239788.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2087
                     /gene="Hadhb"
                     /gene_synonym="TP-beta"
                     /note="hydroxyacyl-CoA dehydrogenase trifunctional
                     multienzyme complex subunit beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 92 ESTs, 13 long SRA reads, 5 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 220 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:171155"
                     /db_xref="RGD:620513"
     CDS             189..1616
                     /gene="Hadhb"
                     /gene_synonym="TP-beta"
                     /codon_start=1
                     /product="trifunctional enzyme subunit beta, mitochondrial
                     isoform X1"
                     /protein_id="XP_006239850.1"
                     /db_xref="GeneID:171155"
                     /db_xref="RGD:620513"
                     /translation="MTTILTSTFRNLSTTSKWALRFSVRPLSCSSQVQSAPAVQTKSK
                     KTLAKPNLKNIVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLYRTNIPKDVVDYI
                     IFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDV
                     VVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLAQRLSLLTKFRLNFLSPELPAVAEF
                     STNETMGHSADRLAAAFAVSRMEQDKYALRSHSLAKKAQDEGHLSDIVPFKVPGKDTV
                     SKDNGIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMSEDRALAMGYKP
                     KAYLRDFIYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFK
                     AMDSDWFAQNYMGRKTKVGAPPLEKFNIWGGSLSLGHPFGATGCRLVMAAANRLRKDG
                     GQYALVAACAAGGQGHAMIVEAYPK"
ORIGIN      
        1 gccgcccttc gtcgtgggcg ggcgtttatc agtctggact tgaccttctt gggggccgca
       61 tccttcgcag actctaaggt gcggcagcgc gcttttctgt tttcttctga ctttcccgca
      121 ggcaggtgcc actttgctcc ggactcttct cgtcggtgcc cgcggccgct acccagtgct
      181 atttcagaat gactaccatc ttgacttcca cttttagaaa cctttctact acatcaaaat
      241 gggccctcag attttctgta agacctctga gctgttcttc acaagtacag tctgccccag
      301 ctgtccagac caagtcaaag aagactttag caaaacctaa tctaaagaac attgtggtgg
      361 tggaaggtgt ccgaattcca tttctgctgt caggcacttc gtataaagac ctaatgccac
      421 atgatttggc tagagccgca ctttcgggtt tgttgtatcg gaccaatatt ccaaaggatg
      481 ttgttgatta tatcattttt ggtacagtta ttcaggaagt aaaaacaagc aatgtggcta
      541 gagaggctgc cctgggagct ggcttctctg ataagactcc agctcacact gtcaccatgg
      601 cttgtatctc ttcaaaccaa gccatgacca cagctgttgg tctgatagct tctggccagt
      661 gtgatgtcgt cgtggctggt ggtgttgagt taatgtctga cgtccctatt cgtcattcaa
      721 gaaatatgag gaaaatgatg cttgatctca ataaagccaa gactctggcc cagcgcctgt
      781 ccttactcac taaattcaga ttgaattttc tgtcccctga gctccctgca gtggctgagt
      841 tctccactaa cgagacaatg ggccactctg ccgaccgtct ggctgctgcc tttgctgttt
      901 ctcgaatgga acaggataaa tatgcactgc gttctcacag tctggccaag aaggcacagg
      961 atgaaggaca tctttctgat attgtaccct tcaaagtacc aggaaaagac acagttagca
     1021 aagataacgg gatccgtcct tcctcactgg agcaaatggc caaactaaag cctgcattca
     1081 tcaaacccta tggcacagtg acagcagcga attcttcttt cctgactgat ggcgcttctg
     1141 cgatgctaat catgtcagag gacagagctc tggccatggg ttataagcca aaggcatatt
     1201 tgagggattt tatatatgtg tctcaggatc caaaagatca gcttttactt ggaccaacat
     1261 atgctactcc aaaagttcta gaaaaggcag gattaaccat gaatgatatt gacgcttttg
     1321 aatttcatga agccttctca ggtcagattt tggctaactt taaagctatg gattctgatt
     1381 ggtttgcaca aaactacatg ggtaggaaaa ccaaggttgg agcacctcct ctggagaagt
     1441 ttaatatctg gggcggatca ctctctctgg gacacccttt tggagccact ggctgtcggt
     1501 tggtcatggc agctgccaac agactgagga aggatggagg ccagtatgct ttagtggctg
     1561 cctgtgcagc tggaggacag ggtcatgcta tgattgtgga agcctaccca aaatgactgc
     1621 tctggaagga ggcaactgat ctctgcagca ctcgcactgg gcaatgccat ttcaatgcac
     1681 taccaagtga tacctgcagt tcctagctct tcttaggaaa caacatttgt ggccttctct
     1741 taaatatttt gcggtcaagc cttgccagtg ttcgagcttt ccgataatca cagcttctgc
     1801 tctctaagtt ccagactatc acagatgtgt acacagttct tgttatctct tgtctctaag
     1861 actaatgact gccagctgct tggagagagg ttagctgagg tttagaacca tctttgtaac
     1921 atttgcagaa tctcctcctt cctgtcagtg tcctacagag aattattttt tctaaaatac
     1981 aatccaatgt gcctacatta agttactata gaaaaaaata atctaaacat ctcctaaaac
     2041 tgacttgctt agagacatgt ttgttgacct taataaagta gacatgt
//
